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Publications

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Book Chapter
Maintenance and replication during latency., Hu, J., Lieberman PM, and Renne R. , Maintenance and replication during latency., Cambridge, (2007) Abstract
Conference Paper
Genome-wide analysis of stepwise hepatocarcinogenesis using next generation sequencer, Midorikawa, Yutaka, Yamamoto Shogo, Ueda Hiroki, Sonoda Kotaro, Tsuji Shingo, Tatsuno Kenji, Shibata Tatsuhiro, Covington Kyle, Wheeler David A., Takayama Tadatoshi, et al. , HEPATOLOGY, Volume 58, p.396A–396A, (2013)
MTA2 is a metastasis promoter in breast cancer cells., Covington, K. R., Barone I., Cui Y., Tsimelzon A., Rodriguez A., Wang T., and Fuqua SA , Cancer Research, Volume 69, Number 2, p.170S–170S, (2009)
MTA2-Overexpression alters Rho pathway expression and enhances the metastatic behavior of breast cancer cells, Covington, Kyle R., Cui Yukun, Barone Ines, Rodriguez Arnoldo, Tsimelzon Anna, Wang Tao, and Fuqua Suzanne A. , CLINICAL & EXPERIMENTAL METASTASIS, Volume 26, Number 7, p.882–883, (2009)
Polymerase epsilon (POLE) mutations and mutator phenotypes in colorectal and endometrial tumors., Shinbrot, Eve, Weinhold Nils, Schultz Nikolaus, Donehower Lawrence A., Drummond Jennifer, Chang Kyle, Gibbs Richard, Sander Chris, and Wheeler David A. , CANCER RESEARCH, Volume 73, Number 8, (2013)
Journal Article
The 1000 Genomes Project: data management and community access., Clarke, Laura, Zheng-Bradley Xiangqun, Smith Richard, Kulesha Eugene, Xiao Chunlin, Toneva Iliana, Vaughan Brendan, Preuss Don, Leinonen Rasko, Shumway Martin, et al. , Nature methods, 2012 May, Volume 9, Issue 5, p.459-62, (2012) Abstract
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer., Pomerantz, Mark M., Ahmadiyeh Nasim, Jia Li, Herman Paula, Verzi Michael P., Doddapaneni Harshavardhan, Beckwith Christine A., Chan Jennifer A., Hills Adam, Davis Matt, et al. , Nature genetics, 2009 Aug, Volume 41, Issue 8, p.882-4, (2009) Abstract
ABCF1 extrinsically regulates retinal pigment epithelial cell phagocytosis., Guo, Feiye, Ding Ying, Caberoy Nora, Alvarado Gabriela, Wang Feng, Chen Rui, and Li Wei , Molecular biology of the cell, 2015 Apr 22, (2015) Abstract
Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method., Lin, Hong, Doddapaneni Harshavardhan, Bai Xianjing, Yao Jiqiang, Zhao Xiaolong, and Civerolo Edwin L. , Molecular and cellular probes, 2008 Feb, Volume 22, Issue 1, p.30-7, (2008) Abstract
Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase., Sun, Tingting, Aceto Nicola, Meerbrey Kristen L., Kessler Jessica D., Zhou Chunshui, Migliaccio Ilenia, Nguyen Don X., Pavlova Natalya N., Botero Maria, Huang Jian, et al. , Cell, 2011 Mar 4, Volume 144, Issue 5, p.703-18, (2011) Abstract
Adult presentation of X-linked Conradi-Hünermann-Happle syndrome., Posey, Jennifer E., Burrage Lindsay C., Campeau Philippe M., Lu James T., Eble Tanya N., Kratz Lisa, Schlesinger Alan E., Gibbs Richard A., Lee Brendan H., and Nagamani Sandesh C. S. , American journal of medical genetics. Part A, 2015 Apr 2, (2015) Abstract
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms., Yang, Jack Y., Dunker A., Liu Jun S., Qin Xiang, Arabnia Hamid R., Yang William, Niemierko Andrzej, Chen Zhongxue, Luo Zuojie, Wang Liangjiang, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.I1, (2014) Abstract
Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network., Hakimi, Ari A., Ostrovnaya Irina, Reva Boris, Schultz Nikolaus, Chen Ying-Bei, Gonen Mithat, Liu Han, Takeda Shugaku, Voss Martin H., Tickoo Satish K., et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2013 Jun 15, Volume 19, Issue 12, p.3259-67, (2013) Abstract
Alu-primed polymerase chain reaction for regional assignment of 110 yeast artificial chromosome clones from the human X chromosome: identification of clones associated with a disease locus., Nelson, D. L., Ballabio A., Victoria M. F., Pieretti M., Bies R. D., Gibbs R. A., Maley J. A., Chinault A. C., Webster T. D., and Caskey C. T. , Proceedings of the National Academy of Sciences of the United States of America, 1991 Jul 15, Volume 88, Issue 14, p.6157-61, (1991) Abstract
The amyloidogenic V122I transthyretin variant in elderly black Americans., Quarta, Cristina C., Buxbaum Joel N., Shah Amil M., Falk Rodney H., Claggett Brian, Kitzman Dalane W., Mosley Thomas H., Butler Kenneth R., Boerwinkle Eric, and Solomon Scott D. , The New England journal of medicine, 2015 Jan 1, Volume 372, Issue 1, p.21-9, (2015) Abstract
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease., Li, Alexander H., Morrison Alanna C., Kovar Christie, Cupples Adrienne L., Brody Jennifer A., Polfus Linda M., Yu Bing, Metcalf Ginger, Muzny Donna, Veeraraghavan Narayanan, et al. , Nature genetics, 2015 Apr 27, (2015) Abstract
Analysis of rare, exonic variation amongst subjects with autism spectrum disorders and population controls., Liu, Li, Sabo Aniko, Neale Benjamin M., Nagaswamy Uma, Stevens Christine, Lim Elaine, Bodea Corneliu A., Muzny Donna, Reid Jeffrey G., Banks Eric, et al. , PLoS genetics, 2013 Apr, Volume 9, Issue 4, p.e1003443, (2013) Abstract
Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa., Doddapaneni, Harshavardhan, Yao Jiqiang, Lin Hong, Walker Andrew M., and Civerolo Edwin L. , BMC genomics, 2006, Volume 7, p.225, (2006) Abstract
Androgen receptor CAG repeat polymorphism in males of six non-human primate species., Mubiru, James N., Cavazos Nicole, Hemmat Peggah, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , Journal of medical primatology, 2012 Feb, Volume 41, Issue 1, p.67-70, (2012) Abstract
APOA5 polymorphisms influence plasma triglycerides in young, healthy African Americans and whites of the CARDIA Study., Klos, Kathy L. E., Hamon Sara, Clark Andrew G., Boerwinkle Eric, Liu Kiang, and Sing Charles F. , Journal of lipid research, 2005 Mar, Volume 46, Issue 3, p.564-71, (2005) Abstract
APOE Modulates the Correlation Between Triglycerides, Cholesterol, and CHD Through Pleiotropy and Gene-by-Gene Interactions., Maxwell, Taylor J., Ballantyne Christie M., Cheverud James M., Guild Cameron S., Ndumele Chiadi E., and Boerwinkle Eric , Genetics, 2013 Oct 4, (2013) Abstract
APOE/C1/C4/C2 hepatic control region polymorphism influences plasma apoE and LDL cholesterol levels., Klos, Kathy, Shimmin Lawrence, Ballantyne Christie, Boerwinkle Eric, Clark Andrew, Coresh Josef, Hanis Craig, Liu Kiang, Sayre Scott, and Hixson James , Human molecular genetics, 2008 Jul 1, Volume 17, Issue 13, p.2039-46, (2008) Abstract
Are extended biopsies really necessary to improve prostate cancer detection?, Damiano, R., Autorino R., Perdonà S., De Sio M., Oliva A., Esposito C., Cantiello F., Di Lorenzo G., Sacco R., and D'Armiento M. , Prostate cancer and prostatic diseases, 2003, Volume 6, Issue 3, p.250-5, (2003) Abstract
ARMC4 mutations cause primary ciliary dyskinesia with randomization of left/right body asymmetry., Hjeij, Rim, Lindstrand Anna, Francis Richard, Zariwala Maimoona A., Liu Xiaoqin, Li You, Damerla Rama, Dougherty Gerard W., Abouhamed Marouan, Olbrich Heike, et al. , American journal of human genetics, 2013 Aug 8, Volume 93, Issue 2, p.357-67, (2013) Abstract


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