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Publications

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Journal Article
A "double adaptor" method for improved shotgun library construction., Andersson, B., Wentland M. A., Ricafrente J. Y., Liu W., and Gibbs R. A. , Analytical biochemistry, 1996 Apr 5, Volume 236, Issue 1, p.107-13, (1996) Abstract
130 kb of DNA sequence reveals two new genes and a regional duplication distal to the human iduronate-2-sulfate sulfatase locus., Timms, K. M., Lu F., Shen Y., Pierson C. A., Muzny D. M., Gu Y., Nelson D. L., and Gibbs R. A. , Genome research, 1995 Aug, Volume 5, Issue 1, p.71-8, (1995) Abstract
16S gut community of the Cameron County Hispanic Cohort., Ross, Matthew C., Muzny Donna M., McCormick Joseph B., Gibbs Richard A., Fisher-Hoch Susan P., and Petrosino Joseph F. , Microbiome, 2015, Volume 3, p.7, (2015) Abstract
28-way vertebrate alignment and conservation track in the UCSC Genome Browser., Miller, Webb, Rosenbloom Kate, Hardison Ross C., Hou Minmei, Taylor James, Raney Brian, Burhans Richard, King David C., Baertsch Robert, Blankenberg Daniel, et al. , Genome research, 2007 Dec, Volume 17, Issue 12, p.1797-808, (2007) Abstract
A-beta-subtype of ketosis-prone diabetes is not predominantly a monogenic diabetic syndrome., Haaland, Wade C., Scaduto Diane I., Maldonado Mario R., Mansouri Dena L., Nalini Ramaswami, Iyer Dinakar, Patel Sanjeet, Guthikonda Anu, Hampe Christiane S., Balasubramanyam Ashok, et al. , Diabetes care, 2009 May, Volume 32, Issue 5, p.873-7, (2009) Abstract
ABCF1 extrinsically regulates retinal pigment epithelial cell phagocytosis., Guo, Feiye, Ding Ying, Caberoy Nora, Alvarado Gabriela, Wang Feng, Chen Rui, and Li Wei , Molecular biology of the cell, 2015 Apr 22, (2015) Abstract
Aberrant TGF-beta production and regulation in metastatic malignancy., Schwarz, L. C., Wright J. A., Gingras M. C., Kondaiah P., Danielpour D., Pimentel M., Sporn M. B., and Greenberg A. H. , Growth factors (Chur, Switzerland), 1990, Volume 3, Issue 2, p.115-27, (1990) Abstract
Accurate determination of DNA in agarose gels using the novel algorithm GelScann(1.0)., Metzker, M. L., Allain K. M., and Gibbs R. A. , Computer applications in the biosciences : CABIOS, 1995 Apr, Volume 11, Issue 2, p.187-94, (1995) Abstract
Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase., Sun, Tingting, Aceto Nicola, Meerbrey Kristen L., Kessler Jessica D., Zhou Chunshui, Migliaccio Ilenia, Nguyen Don X., Pavlova Natalya N., Botero Maria, Huang Jian, et al. , Cell, 2011 Mar 4, Volume 144, Issue 5, p.703-18, (2011) Abstract
Adaptor-based uracil DNA glycosylase cloning simplifies shotgun library construction for large-scale sequencing., Andersson, B., Povinelli C. M., Wentland M. A., Shen Y., Muzny D. M., and Gibbs R. A. , Analytical biochemistry, 1994 May 1, Volume 218, Issue 2, p.300-8, (1994) Abstract
Adult presentation of X-linked Conradi-Hünermann-Happle syndrome., Posey, Jennifer E., Burrage Lindsay C., Campeau Philippe M., Lu James T., Eble Tanya N., Kratz Lisa, Schlesinger Alan E., Gibbs Richard A., Lee Brendan H., and Nagamani Sandesh C. S. , American journal of medical genetics. Part A, 2015 Apr 2, (2015) Abstract
Advances in genome biology and technology., Gunaratne, Preethi H. , Expert review of molecular diagnostics, 2004 Nov, Volume 4, Issue 6, p.757-60, (2004)
Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network., Hakimi, Ari A., Ostrovnaya Irina, Reva Boris, Schultz Nikolaus, Chen Ying-Bei, Gonen Mithat, Liu Han, Takeda Shugaku, Voss Martin H., Tickoo Satish K., et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2013 Jun 15, Volume 19, Issue 12, p.3259-67, (2013) Abstract
Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas., Haecker, Irina, Gay Lauren A., Yang Yajie, Hu Jianhong, Morse Alison M., McIntyre Lauren M., and Renne Rolf , PLoS pathogens, 2012, Volume 8, Issue 8, p.e1002884, (2012) Abstract
An allylic/acyclic adenosine nucleoside triphosphate for termination of DNA synthesis by DNA template-dependent polymerases., Martinez, C. I., Thoresen L. H., Gibbs R. A., and Burgess K. , Nucleic acids research, 1999 Mar 1, Volume 27, Issue 5, p.1271-4, (1999) Abstract
Alu-primed polymerase chain reaction for regional assignment of 110 yeast artificial chromosome clones from the human X chromosome: identification of clones associated with a disease locus., Nelson, D. L., Ballabio A., Victoria M. F., Pieretti M., Bies R. D., Gibbs R. A., Maley J. A., Chinault A. C., Webster T. D., and Caskey C. T. , Proceedings of the National Academy of Sciences of the United States of America, 1991 Jul 15, Volume 88, Issue 14, p.6157-61, (1991) Abstract
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
Analysis of HIV type 1 reverse transcriptase expression in a human cell line., Ansari-Lari, M. A., and Gibbs R. A. , AIDS research and human retroviruses, 1994 Sep, Volume 10, Issue 9, p.1117-24, (1994) Abstract
Analysis of human immunodeficiency virus type 1 integrase mutants., Ansari-Lari, M. A., Donehower L. A., and Gibbs R. A. , Virology, 1995 Aug 1, Volume 211, Issue 1, p.332-5, (1995) Abstract
Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease., Li, Alexander H., Morrison Alanna C., Kovar Christie, Cupples Adrienne L., Brody Jennifer A., Polfus Linda M., Yu Bing, Metcalf Ginger, Muzny Donna, Veeraraghavan Narayanan, et al. , Nature genetics, 2015 Apr 27, (2015) Abstract
Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencing., Fondon, John W., Martin Andy, Richards Stephen, Gibbs Richard A., and Mittelman David , PloS one, 2012, Volume 7, Issue 3, p.e33036, (2012) Abstract
Analysis of prostate-specific antigen transcripts in chimpanzees, cynomolgus monkeys, baboons, and african green monkeys., Mubiru, James N., Yang Alice S., Olsen Christian, Nayak Sudhir, Livi Carolina B., Dick Edward J., Owston Michael, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , PloS one, 2014, Volume 9, Issue 4, p.e94522, (2014) Abstract
Analysis of rare, exonic variation amongst subjects with autism spectrum disorders and population controls., Liu, Li, Sabo Aniko, Neale Benjamin M., Nagaswamy Uma, Stevens Christine, Lim Elaine, Bodea Corneliu A., Muzny Donna, Reid Jeffrey G., Banks Eric, et al. , PLoS genetics, 2013 Apr, Volume 9, Issue 4, p.e1003443, (2013) Abstract
Analysis of the quality and utility of random shotgun sequencing at low redundancies., Bouck, J., Miller W., Gorrell J. H., Muzny D., and Gibbs R. A. , Genome research, 1998 Oct, Volume 8, Issue 10, p.1074-84, (1998) Abstract
Analysis of transcriptome data in the red flour beetle, Tribolium castaneum., Park, Yoonseong, Aikins Jamie, Wang L. J., Beeman Richard W., Oppert Brenda, Lord Jeffrey C., Brown Susan J., Lorenzen Marcé D., Richards Stephen, Weinstock George M., et al. , Insect biochemistry and molecular biology, 2008 Apr, Volume 38, Issue 4, p.380-6, (2008) Abstract


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