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Publications

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2011
Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium., Fornage, Myriam, Debette Stephanie, Bis Joshua C., Schmidt Helena, Ikram Arfan M., Dufouil Carole, Sigurdsson Sigurdur, Lumley Thomas, DeStefano Anita L., Fazekas Franz, et al. , Annals of neurology, 2011 Jun, Volume 69, Issue 6, p.928-39, (2011) Abstract
Evolution of pleiotropy: epistatic interaction pattern supports a mechanistic model underlying variation in genotype-phenotype map., Pavlicev, Mihaela, Norgard Elizabeth A., Fawcett Gloria L., and Cheverud James M. , Journal of experimental zoology. Part B, Molecular and developmental evolution, 2011 Jul 15, Volume 316, Issue 5, p.371-85, (2011) Abstract
Comparative and demographic analysis of orang-utan genomes., Locke, Devin P., Hillier Ladeana W., Warren Wesley C., Worley Kim C., Nazareth Lynne V., Muzny Donna M., Yang Shiaw-Pyng, Wang Zhengyuan, Chinwalla Asif T., Minx Pat, et al. , Nature, 2011 Jan 27, Volume 469, Issue 7331, p.529-33, (2011) Abstract
PDX-1: demonstration of oncogenic properties in pancreatic cancer., Liu, Shi-He, Patel Sanjeet, Gingras Marie-Claude, Nemunaitis John, Zhou Guisheng, Chen Changyi, Li Min, Fisher William, Gibbs Richard, and Brunicardi Charles F. , Cancer, 2011 Feb 15, Volume 117, Issue 4, p.723-33, (2011) Abstract
Building a comprehensive genomic program for hepatocellular carcinoma., Harring, Theresa R., Guiteau Jacfranz J., Nguyen Thao N. T., Cotton Ron T., Gingras Marie-Claude, Wheeler David A., O'Mahony Christine A., Gibbs Richard A., Brunicardi Charles F., and Goss John A. , World journal of surgery, 2011 Aug, Volume 35, Issue 8, p.1746-50, (2011) Abstract
Long-range massively parallel mate pair sequencing detects distinct mutations and similar patterns of structural mutability in two breast cancer cell lines., Hampton, Oliver A., Koriabine Maxim, Miller Christopher A., Coarfa Cristian, Li Jian, Den Hollander Petra, Schoenherr Caroline, Carbone Lucia, Nefedov Mikhail, Ten Hallers Boudewijn F. H., et al. , Cancer genetics, 2011 Aug, Volume 204, Issue 8, p.447-57, (2011) Abstract
A primer on a hepatocellular carcinoma bioresource bank using the cancer genome atlas guidelines: practical issues and pitfalls., Nguyen, Thao N. T., Cotton Ron T., Harring Theresa R., Guiteau Jacfranz J., Gingras Marie-Claude, Wheeler David A., O'Mahony Christine A., Gibbs Richard A., Brunicardi Charles F., and Goss John A. , World journal of surgery, 2011 Aug, Volume 35, Issue 8, p.1732-7, (2011) Abstract
Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay., Šmajs, David, Zobaníková Marie, Strouhal Michal, Čejková Darina, Dugan-Rocha Shannon, Pospíšilová Petra, Norris Steven J., Albert Tom, Qin Xiang, Hallsworth-Pepin Kym, et al. , PloS one, 2011, Volume 6, Issue 5, p.e20415, (2011) Abstract
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development., Renfree, Marilyn B., Papenfuss Anthony T., Deakin Janine E., Lindsay James, Heider Thomas, Belov Katherine, Rens Willem, Waters Paul D., Pharo Elizabeth A., Shaw Geoff, et al. , Genome biology, 2011, Volume 12, Issue 8, p.R81, (2011) Abstract
Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities., Bainbridge, Matthew N., Wang Min, Wu Yuanqing, Newsham Irene, Muzny Donna M., Jefferies John L., Albert Thomas J., Burgess Daniel L., and Gibbs Richard A. , Genome biology, 2011, Volume 12, Issue 7, p.R68, (2011) Abstract
New Found Association Between Mutated Tumor Suppressive Gene And Non-Hepatitis C Hepatocellular Carcinoma, Nguyen, NT, Harring TR, Drummond J., Chang K., Gingras M., Wheeler D. A., O'Mahoney CA, and Goss JA , Journal of Surgical Research, Volume 165, Number 2, p.177, (2011)
2010
Integrating common and rare genetic variation in diverse human populations., Altshuler, David M., Gibbs Richard A., Peltonen Leena, Altshuler David M., Gibbs Richard A., Peltonen Leena, Dermitzakis Emmanouil, Schaffner Stephen F., Yu Fuli, Peltonen Leena, et al. , Nature, 2010 Sep 2, Volume 467, Issue 7311, p.52-8, (2010) Abstract
Associations between dietary patterns and flow cytometry-measured biomarkers of inflammation and cellular activation in the Atherosclerosis Risk in Communities (ARIC) Carotid Artery MRI Study., Nettleton, Jennifer A., Matijevic Nena, Follis Jack L., Folsom Aaron R., and Boerwinkle Eric , Atherosclerosis, 2010 Sep, Volume 212, Issue 1, p.260-7, (2010) Abstract
A catalog of reference genomes from the human microbiome., Nelson, Karen E., Weinstock George M., Highlander Sarah K., Worley Kim C., Creasy Heather Huot, Wortman Jennifer Russo, Rusch Douglas B., Mitreva Makedonka, Sodergren Erica, Chinwalla Asif T., et al. , Science (New York, N.Y.), 2010 May 21, Volume 328, Issue 5981, p.994-9, (2010) Abstract
Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels., Barbalic, Maja, Dupuis Josée, Dehghan Abbas, Bis Joshua C., Hoogeveen Ron C., Schnabel Renate B., Nambi Vijay, Bretler Monique, Smith Nicholas L., Peters Annette, et al. , Human molecular genetics, 2010 May 1, Volume 19, Issue 9, p.1863-72, (2010) Abstract
Calpain-10 is a component of the obesity-related quantitative trait locus Adip1., Cheverud, James M., Fawcett Gloria L., Jarvis Joseph P., Norgard Elizabeth A., Pavlicev Mihaela, Pletscher Susan L., Polonsky Kenneth S., Ye Honggang, Bell Graeme I., and Semenkovich Clay F. , Journal of lipid research, 2010 May, Volume 51, Issue 5, p.907-13, (2010) Abstract
MMP2 genetic variation is associated with measures of fibrous cap thickness: The Atherosclerosis Risk in Communities Carotid MRI Study., Volcik, Kelly A., Campbell Stephen, Chambless Lloyd E., Coresh Josef, Folsom Aaron R., Mosley Thomas H., Ni Hanyu, Wagenknecht Lynne E., Wasserman Bruce A., and Boerwinkle Eric , Atherosclerosis, 2010 May, Volume 210, Issue 1, p.188-93, (2010) Abstract
A full-length cDNA resource for the pea aphid, Acyrthosiphon pisum., Shigenobu, S., Richards S., Cree A. G., Morioka M., Fukatsu T., Kudo T., Miyagishima S., Gibbs R. A., Stern D. L., and Nakabachi A. , Insect molecular biology, 2010 Mar, Volume 19 Suppl 2, p.23-31, (2010) Abstract
Pretranscriptional regulation of Tgf-beta1 by PI polyamide prevents scarring and accelerates wound healing of the cornea after exposure to alkali., Chen, Min, Matsuda Hiroyuki, Wang Linghua, Watanabe Takayoshi, Kimura Makoto T., Igarashi Jun, Wang Xiaofei, Sakimoto Tohru, Fukuda Noboru, Sawa Mitsuru, et al. , Molecular therapy : the journal of the American Society of Gene Therapy, 2010 Mar, Volume 18, Issue 3, p.519-27, (2010) Abstract
Functional and evolutionary insights from the genomes of three parasitoid Nasonia species., Werren, John H., Richards Stephen, Desjardins Christopher A., Niehuis Oliver, Gadau Jürgen, Colbourne John K., Werren John H., Richards Stephen, Desjardins Christopher A., Niehuis Oliver, et al. , Science (New York, N.Y.), 2010 Jan 15, Volume 327, Issue 5963, p.343-8, (2010) Abstract
Complete Khoisan and Bantu genomes from southern Africa., Schuster, Stephan C., Miller Webb, Ratan Aakrosh, Tomsho Lynn P., Giardine Belinda, Kasson Lindsay R., Harris Robert S., Petersen Desiree C., Zhao Fangqing, Qi Ji, et al. , Nature, 2010 Feb 18, Volume 463, Issue 7283, p.943-7, (2010) Abstract
Interactions of dietary whole-grain intake with fasting glucose- and insulin-related genetic loci in individuals of European descent: a meta-analysis of 14 cohort studies., Nettleton, Jennifer A., McKeown Nicola M., Kanoni Stavroula, Lemaitre Rozenn N., Hivert Marie-France, Ngwa Julius, van Rooij Frank J. A., Sonestedt Emily, Wojczynski Mary K., Ye Zheng, et al. , Diabetes care, 2010 Dec, Volume 33, Issue 12, p.2684-91, (2010) Abstract
Whole-genome sequencing in a patient with Charcot-Marie-Tooth neuropathy., Lupski, James R., Reid Jeffrey G., Gonzaga-Jauregui Claudia, Rio Deiros David, Chen David C. Y., Nazareth Lynne, Bainbridge Matthew, Dinh Huyen, Jing Chyn, Wheeler David A., et al. , The New England journal of medicine, 2010 Apr 1, Volume 362, Issue 13, p.1181-91, (2010) Abstract
The fms21 (pilA)-fms20 locus encoding one of four distinct pili of Enterococcus faecium is harboured on a large transferable plasmid associated with gut colonization and virulence., Kim, David S., Singh Kavindra V., Nallapareddy Sreedhar R., Qin Xiang, Panesso Diana, Arias Cesar A., and Murray Barbara E. , Journal of medical microbiology, 2010 Apr, Volume 59, Issue Pt 4, p.505-7, (2010)
Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential., Yeoman, Carl J., Yildirim Suleyman, Thomas Susan M., Durkin Scott A., Torralba Manolito, Sutton Granger, Buhay Christian J., Ding Yan, Dugan-Rocha Shannon P., Muzny Donna M., et al. , PloS one, 2010, Volume 5, Issue 8, p.e12411, (2010) Abstract


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