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Publications

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2010
Deep resequencing reveals excess rare recent variants consistent with explosive population growth., Coventry, Alex, Bull-Otterson Lara M., Liu Xiaoming, Clark Andrew G., Maxwell Taylor J., Crosby Jacy, Hixson James E., Rea Thomas J., Muzny Donna M., Lewis Lora R., et al. , Nature communications, 2010, Volume 1, p.131, (2010) Abstract
Discovery of novel microRNAs in female reproductive tract using next generation sequencing., Creighton, Chad J., Benham Ashley L., Zhu Huifeng, Khan Mahjabeen F., Reid Jeffrey G., Nagaraja Ankur K., Fountain Michael D., Dziadek Olivia, Han Derek, Ma Lang, et al. , PloS one, 2010, Volume 5, Issue 3, p.e9637, (2010) Abstract
Whole exome capture in solution with 3 Gbp of data., Bainbridge, Matthew N., Wang Min, Burgess Daniel L., Kovar Christie, Rodesch Matthew J., D'Ascenzo Mark, Kitzman Jacob, Wu Yuan-Qing, Newsham Irene, Richmond Todd A., et al. , Genome biology, 2010, Volume 11, Issue 6, p.R62, (2010) Abstract
2009
Genomics. Genome project standards in a new era of sequencing., Chain, P. S. G., Grafham D. V., Fulton R. S., Fitzgerald M. G., Hostetler J., Muzny D., Ali J., Birren B., Bruce D. C., Buhay C., et al. , Science (New York, N.Y.), 2009 Oct 9, Volume 326, Issue 5950, p.236-7, (2009)
Resources for genetic management and genomics research on non-human primates at the National Primate Research Centers (NPRCs)., Kanthaswamy, S., Capitanio J. P., Dubay C. J., Ferguson B., Folks T., Ha J. C., Hotchkiss C. E., Johnson Z. P., Katze M. G., Kean L. S., et al. , Journal of medical primatology, 2009 Oct, Volume 38 Suppl 1, p.17-23, (2009) Abstract
A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I)., Sillanpää, Jouko, Nallapareddy Sreedhar R., Qin Xiang, Singh Kavindra V., Muzny Donna M., Kovar Christie L., Nazareth Lynne V., Gibbs Richard A., Ferraro Mary J., Steckelberg James M., et al. , Journal of bacteriology, 2009 Nov, Volume 191, Issue 21, p.6643-53, (2009) Abstract
A-beta-subtype of ketosis-prone diabetes is not predominantly a monogenic diabetic syndrome., Haaland, Wade C., Scaduto Diane I., Maldonado Mario R., Mansouri Dena L., Nalini Ramaswami, Iyer Dinakar, Patel Sanjeet, Guthikonda Anu, Hampe Christiane S., Balasubramanyam Ashok, et al. , Diabetes care, 2009 May, Volume 32, Issue 5, p.873-7, (2009) Abstract
Carbohydrate intake modifies associations between ANGPTL4[E40K] genotype and HDL-cholesterol concentrations in White men from the Atherosclerosis Risk in Communities (ARIC) study., Nettleton, Jennifer A., Volcik Kelly A., Hoogeveen Ron C., and Boerwinkle Eric , Atherosclerosis, 2009 Mar, Volume 203, Issue 1, p.214-20, (2009) Abstract
The prolonged effect of repeated maternal glucocorticoid exposure on the maternal and fetal leptin/insulin-like growth factor axis in Papio species., Schlabritz-Loutsevitch, Natalia E., Lopez-Alvarenga Juan C., Comuzzie Anthony G., Miller Myrna M., Ford Stephen P., Li Cun, Hubbard Gene B., Ferry Robert J., and Nathanielsz Peter W. , Reproductive sciences (Thousand Oaks, Calif.), 2009 Mar, Volume 16, Issue 3, p.308-19, (2009) Abstract
Glucocorticoid receptor gene variant in the 3' untranslated region is associated with multiple measures of blood pressure., Chung, Charles C., Shimmin Lawrence, Natarajan Sivamani, Hanis Craig L., Boerwinkle Eric, and Hixson James E. , The Journal of clinical endocrinology and metabolism, 2009 Jan, Volume 94, Issue 1, p.268-76, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds., Gibbs, Richard A., Taylor Jeremy F., Van Tassell Curtis P., Barendse William, Eversole Kellye A., Gill Clare A., Green Ronnie D., Hamernik Debora L., Kappes Steven M., Lien Sigbjørn, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.528-32, (2009) Abstract
Apoptosis, autophagy, accelerated senescence and reactive oxygen in the response of human breast tumor cells to adriamycin., Di, Xu, Shiu Robert P., Newsham Irene F., and Gewirtz David A. , Biochemical pharmacology, 2009 Apr 1, Volume 77, Issue 7, p.1139-50, (2009) Abstract
Replication of long-bone length QTL in the F9-F10 LG,SM advanced intercross., Norgard, Elizabeth A., Jarvis Joseph P., Roseman Charles C., Maxwell Taylor J., Kenney-Hunt Jane P., Samocha Kaitlin E., Pletscher Susan L., Wang Bing, Fawcett Gloria L., Leatherwood Christopher J., et al. , Mammalian genome : official journal of the International Mammalian Genome Society, 2009 Apr, Volume 20, Issue 4, p.224-35, (2009) Abstract
Sequencing the full-length of the phosphatase and tensin homolog (PTEN) gene in hepatocellular carcinoma (HCC) using the 454 GS20 and Illumina GA DNA sequencing platforms., Rodriguez, Joel A., Guiteau Jacfranz J., Nazareth Lynne, Reid Jeff G., Goss John A., Gibbs Richard A., and Gingras Marie-Claude , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.647-52, (2009) Abstract
2008
Somatic mutations affect key pathways in lung adenocarcinoma., Ding, Li, Getz Gad, Wheeler David A., Mardis Elaine R., McLellan Michael D., Cibulskis Kristian, Sougnez Carrie, Greulich Heidi, Muzny Donna M., Morgan Margaret B., et al. , Nature, 2008 Oct 23, Volume 455, Issue 7216, p.1069-75, (2008) Abstract
Identification and phenotypic characterization of a second collagen adhesin, Scm, and genome-based identification and analysis of 13 other predicted MSCRAMMs, including four distinct pilus loci, in Enterococcus faecium., Sillanpää, Jouko, Nallapareddy Sreedhar R., Prakash Vittal P., Qin Xiang, Höök Magnus, Weinstock George M., and Murray Barbara E. , Microbiology (Reading, England), 2008 Oct, Volume 154, Issue Pt 10, p.3199-211, (2008) Abstract
Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes., Reid, Jeffrey G., Nagaraja Ankur K., Lynn Francis C., Drabek Rafal B., Muzny Donna M., Shaw Chad A., Weiss Michelle K., Naghavi Arash O., Khan Mahjabeen, Zhu Huifeng, et al. , Genome research, 2008 Oct, Volume 18, Issue 10, p.1571-81, (2008) Abstract
Longitudinal changes in triglycerides according to ANGPTL4[E40K] genotype and longitudinal body weight change in the atherosclerosis risk in communities study., Nettleton, Jennifer A., Volcik Kelly A., Demerath Ellen W., Boerwinkle Eric, and Folsom Aaron R. , Annals of epidemiology, 2008 Nov, Volume 18, Issue 11, p.842-6, (2008) Abstract
Identification of quantitative trait loci affecting murine long bone length in a two-generation intercross of LG/J and SM/J Mice., Norgard, Elizabeth A., Roseman Charles C., Fawcett Gloria L., Pavlicev Mihaela, Morgan Clinton D., Pletscher Susan L., Wang Bing, and Cheverud James M. , Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research, 2008 Jun, Volume 23, Issue 6, p.887-95, (2008) Abstract
Peroxisome proliferator-activated receptor [alpha] genetic variation interacts with n-6 and long-chain n-3 fatty acid intake to affect total cholesterol and LDL-cholesterol concentrations in the Atherosclerosis Risk in Communities Study., Volcik, Kelly A., Nettleton Jennifer A., Ballantyne Christie M., and Boerwinkle Eric , The American journal of clinical nutrition, 2008 Jun, Volume 87, Issue 6, p.1926-31, (2008) Abstract
Understanding the development of human bladder cancer by using a whole-organ genomic mapping strategy., Majewski, Tadeusz, Lee Sangkyou, Jeong Joon, Yoon Dong-Sup, Kram Andrzej, Kim Mi-Sook, Tuziak Tomasz, Bondaruk Jolanta, Lee Sooyong, Park Weon-Seo, et al. , Laboratory investigation; a journal of technical methods and pathology, 2008 Jul, Volume 88, Issue 7, p.694-721, (2008) Abstract
The genome of the model beetle and pest Tribolium castaneum., Richards, Stephen, Gibbs Richard A., Weinstock George M., Brown Susan J., Denell Robin, Beeman Richard W., Gibbs Richard, Beeman Richard W., Brown Susan J., Bucher Gregor, et al. , Nature, 2008 Apr 24, Volume 452, Issue 7190, p.949-55, (2008) Abstract
The complete genome of an individual by massively parallel DNA sequencing., Wheeler, David A., Srinivasan Maithreyan, Egholm Michael, Shen Yufeng, Chen Lei, McGuire Amy, He Wen, Chen Yi-Ju, Makhijani Vinod, Roth Thomas G., et al. , Nature, 2008 Apr 17, Volume 452, Issue 7189, p.872-6, (2008) Abstract


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