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Publications

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Conference Paper
Genome-wide analysis of stepwise hepatocarcinogenesis using next generation sequencer, Midorikawa, Yutaka, Yamamoto Shogo, Ueda Hiroki, Sonoda Kotaro, Tsuji Shingo, Tatsuno Kenji, Shibata Tatsuhiro, Covington Kyle, Wheeler David A., Takayama Tadatoshi, et al. , HEPATOLOGY, Volume 58, p.396A–396A, (2013)
IDENTIFICATION OF A CDNA-ENCODING THE LYSOZYME SYNTHESIZED BY BOVINE TRACHEAL GLAND SEROUS CELLS, Takeuchi, K., IRWIN D., Shinbrot E., Stewart C. B., and Basbaum C. , MOLECULAR BIOLOGY OF THE CELL, Volume 3, p.A80–A80, (1992)
Polymerase epsilon (POLE) mutations and mutator phenotypes in colorectal and endometrial tumors., Shinbrot, Eve, Weinhold Nils, Schultz Nikolaus, Donehower Lawrence A., Drummond Jennifer, Chang Kyle, Gibbs Richard, Sander Chris, and Wheeler David A. , CANCER RESEARCH, Volume 73, Number 8, (2013)
Whole Exome Sequencing of Polycythemia Vera Reveals Novel Recurrent Somatic and Germline Variation, Wang, Linghua, Swierczek Sabina, Piterkova Lucie, Hickman Kimberly, Wheeler David A., and Prchal Josef T. , Blood, Volume 120, Number 21, (2012)
Journal Article
The 1000 Genomes Project: data management and community access., Clarke, Laura, Zheng-Bradley Xiangqun, Smith Richard, Kulesha Eugene, Xiao Chunlin, Toneva Iliana, Vaughan Brendan, Preuss Don, Leinonen Rasko, Shumway Martin, et al. , Nature methods, 2012 May, Volume 9, Issue 5, p.459-62, (2012) Abstract
130 kb of DNA sequence reveals two new genes and a regional duplication distal to the human iduronate-2-sulfate sulfatase locus., Timms, K. M., Lu F., Shen Y., Pierson C. A., Muzny D. M., Gu Y., Nelson D. L., and Gibbs R. A. , Genome research, 1995 Aug, Volume 5, Issue 1, p.71-8, (1995) Abstract
28-way vertebrate alignment and conservation track in the UCSC Genome Browser., Miller, Webb, Rosenbloom Kate, Hardison Ross C., Hou Minmei, Taylor James, Raney Brian, Burhans Richard, King David C., Baertsch Robert, Blankenberg Daniel, et al. , Genome research, 2007 Dec, Volume 17, Issue 12, p.1797-808, (2007) Abstract
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer., Pomerantz, Mark M., Ahmadiyeh Nasim, Jia Li, Herman Paula, Verzi Michael P., Doddapaneni Harshavardhan, Beckwith Christine A., Chan Jennifer A., Hills Adam, Davis Matt, et al. , Nature genetics, 2009 Aug, Volume 41, Issue 8, p.882-4, (2009) Abstract
A-beta-subtype of ketosis-prone diabetes is not predominantly a monogenic diabetic syndrome., Haaland, Wade C., Scaduto Diane I., Maldonado Mario R., Mansouri Dena L., Nalini Ramaswami, Iyer Dinakar, Patel Sanjeet, Guthikonda Anu, Hampe Christiane S., Balasubramanyam Ashok, et al. , Diabetes care, 2009 May, Volume 32, Issue 5, p.873-7, (2009) Abstract
Aberrant TGF-beta production and regulation in metastatic malignancy., Schwarz, L. C., Wright J. A., Gingras M. C., Kondaiah P., Danielpour D., Pimentel M., Sporn M. B., and Greenberg A. H. , Growth factors (Chur, Switzerland), 1990, Volume 3, Issue 2, p.115-27, (1990) Abstract
Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase., Sun, Tingting, Aceto Nicola, Meerbrey Kristen L., Kessler Jessica D., Zhou Chunshui, Migliaccio Ilenia, Nguyen Don X., Pavlova Natalya N., Botero Maria, Huang Jian, et al. , Cell, 2011 Mar 4, Volume 144, Issue 5, p.703-18, (2011) Abstract
Adaptor-based uracil DNA glycosylase cloning simplifies shotgun library construction for large-scale sequencing., Andersson, B., Povinelli C. M., Wentland M. A., Shen Y., Muzny D. M., and Gibbs R. A. , Analytical biochemistry, 1994 May 1, Volume 218, Issue 2, p.300-8, (1994) Abstract
Adult presentation of X-linked Conradi-Hünermann-Happle syndrome., Posey, Jennifer E., Burrage Lindsay C., Campeau Philippe M., Lu James T., Eble Tanya N., Kratz Lisa, Schlesinger Alan E., Gibbs Richard A., Lee Brendan H., and Nagamani Sandesh C. S. , American journal of medical genetics. Part A, 2015 Apr 2, (2015) Abstract
Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network., Hakimi, Ari A., Ostrovnaya Irina, Reva Boris, Schultz Nikolaus, Chen Ying-Bei, Gonen Mithat, Liu Han, Takeda Shugaku, Voss Martin H., Tickoo Satish K., et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2013 Jun 15, Volume 19, Issue 12, p.3259-67, (2013) Abstract
Aggressive tumor growth and clinical evolution in a patient with X-linked acro-gigantism syndrome., Naves, Luciana A., Daly Adrian F., Dias Luiz Augusto, Yuan Bo, Zakir Juliano Coelho Oliveira, Barra Gustavo Barcellos, Palmeira Leonor, Villa Chiara, Trivellin Giampaolo, Júnior Armindo Jreige, et al. , Endocrine, 2015 Nov 25, (2015) Abstract
Allelic Mutations of KITLG, Encoding KIT Ligand, Cause Asymmetric and Unilateral Hearing Loss and Waardenburg Syndrome Type 2., Zazo Seco, Celia, Serrão de Castro Luciana, van Nierop Josephine W., Morín Matías, Jhangiani Shalini, Verver Eva J. J., Schraders Margit, Maiwald Nadine, Wesdorp Mieke, Venselaar Hanka, et al. , American journal of human genetics, 2015 Nov 5, Volume 97, Issue 5, p.647-60, (2015) Abstract
Ampullary Cancers Harbor the Tumor Suppressor Gene ELF3 and Exhibit Frequent WNT Dysregulation., Gingras, Marie-Claude, Covington Kyle R., Chang David K., Donehower Lawrence A., Gill Anthony J., Ittmann Michael M., Creighton Chad J., Johns Amber L., Shinbrot Eve, Dewal Ninad, et al. , Cell reports, 2016 Jan 19, (2016) Abstract
Amygdalar and hippocampal substrates of anxious temperament differ in their heritability., Oler, Jonathan A., Fox Andrew S., Shelton Steven E., Rogers Jeffrey, Dyer Thomas D., Davidson Richard J., Shelledy Wendy, Oakes Terrence R., Blangero John, and Kalin Ned H. , Nature, 2010 Aug 12, Volume 466, Issue 7308, p.864-8, (2010) Abstract
The amyloidogenic V122I transthyretin variant in elderly black Americans., Quarta, Cristina C., Buxbaum Joel N., Shah Amil M., Falk Rodney H., Claggett Brian, Kitzman Dalane W., Mosley Thomas H., Butler Kenneth R., Boerwinkle Eric, and Solomon Scott D. , The New England journal of medicine, 2015 Jan 1, Volume 372, Issue 1, p.21-9, (2015) Abstract
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis., Xu, Y., Singh K. V., Qin X., Murray B. E., and Weinstock G. M. , Infection and immunity, 2000 Feb, Volume 68, Issue 2, p.815-23, (2000) Abstract
Analysis of prostate-specific antigen transcripts in chimpanzees, cynomolgus monkeys, baboons, and african green monkeys., Mubiru, James N., Yang Alice S., Olsen Christian, Nayak Sudhir, Livi Carolina B., Dick Edward J., Owston Michael, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , PloS one, 2014, Volume 9, Issue 4, p.e94522, (2014) Abstract
Analysis of rare, exonic variation amongst subjects with autism spectrum disorders and population controls., Liu, Li, Sabo Aniko, Neale Benjamin M., Nagaswamy Uma, Stevens Christine, Lim Elaine, Bodea Corneliu A., Muzny Donna, Reid Jeffrey G., Banks Eric, et al. , PLoS genetics, 2013 Apr, Volume 9, Issue 4, p.e1003443, (2013) Abstract
Analysis of viral cis elements conferring Kaposi's sarcoma-associated herpesvirus episome partitioning and maintenance., Skalsky, Rebecca L., Hu Jianhong, and Renne Rolf , Journal of virology, 2007 Sep, Volume 81, Issue 18, p.9825-37, (2007) Abstract
Androgen receptor CAG repeat polymorphism in males of six non-human primate species., Mubiru, James N., Cavazos Nicole, Hemmat Peggah, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , Journal of medical primatology, 2012 Feb, Volume 41, Issue 1, p.67-70, (2012) Abstract


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