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Journal Article
The 1000 Genomes Project: data management and community access., Clarke, Laura, Zheng-Bradley Xiangqun, Smith Richard, Kulesha Eugene, Xiao Chunlin, Toneva Iliana, Vaughan Brendan, Preuss Don, Leinonen Rasko, Shumway Martin, et al. , Nature methods, 2012 May, Volume 9, Issue 5, p.459-62, (2012) Abstract
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms., Yang, Jack Y., Dunker A., Liu Jun S., Qin Xiang, Arabnia Hamid R., Yang William, Niemierko Andrzej, Chen Zhongxue, Luo Zuojie, Wang Liangjiang, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.I1, (2014) Abstract
Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis., Xu, Y., Singh K. V., Qin X., Murray B. E., and Weinstock G. M. , Infection and immunity, 2000 Feb, Volume 68, Issue 2, p.815-23, (2000) Abstract
Association studies for next-generation sequencing., Luo, Li, Boerwinkle Eric, and Xiong Momiao , Genome research, 2011 Jul, Volume 21, Issue 7, p.1099-108, (2011) Abstract
The Cancer Genome Atlas Pan-Cancer analysis project., Chang, Kyle, Creighton Chad J., Davis Caleb F., Donehower Lawrence, Drummond Jennifer, Wheeler David, Ally Adrian, Balasundaram Miruna, Birol Inanc, Butterfield Yaron S. N., et al. , Nature genetics, 2013 Sep 26, Volume 45, Issue 10, p.1113-20, (2013)
A catalog of reference genomes from the human microbiome., Nelson, Karen E., Weinstock George M., Highlander Sarah K., Worley Kim C., Creasy Heather Huot, Wortman Jennifer Russo, Rusch Douglas B., Mitreva Makedonka, Sodergren Erica, Chinwalla Asif T., et al. , Science (New York, N.Y.), 2010 May 21, Volume 328, Issue 5981, p.994-9, (2010) Abstract
Characterization of HPV and host genome interactions in primary head and neck cancers., Parfenov, Michael, Pedamallu Chandra Sekhar, Gehlenborg Nils, Freeman Samuel S., Danilova Ludmila, Bristow Christopher A., Lee Semin, Hadjipanayis Angela G., Ivanova Elena V., Wilkerson Matthew D., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2014 Oct 13, (2014) Abstract
Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence., Petrosino, Joseph F., Xiang Qin, Karpathy Sandor E., Jiang Huaiyang, Yerrapragada Shailaja, Liu Yamei, Gioia Jason, Hemphill Lisa, Gonzalez Arely, Raghavan T. M., et al. , Journal of bacteriology, 2006 Oct, Volume 188, Issue 19, p.6977-85, (2006) Abstract
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes., Seshadri, Rekha, Myers Garry S. A., Tettelin Hervé, Eisen Jonathan A., Heidelberg John F., Dodson Robert J., Davidsen Tanja M., DeBoy Robert T., Fouts Derrick E., Haft Dan H., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2004 Apr 13, Volume 101, Issue 15, p.5646-51, (2004) Abstract
Comprehensive molecular diagnosis of 67 Chinese Usher syndrome probands: high rate of ethnicity specific mutations in Chinese USH patients., Jiang, Lichun, Liang Xiaofang, Li Yumei, Wang Jing, Zaneveld Jacques Eric, Wang Hui, Xu Shan, Wang Keqing, Wang Binbin, Chen Rui, et al. , Orphanet journal of rare diseases, 2015, Volume 10, Issue 1, p.110, (2015) Abstract
Comprehensive Molecular Diagnosis of a Large Chinese Leber Congenital Amaurosis Cohort., Wang, Hui, Wang Xia, Zou Xuan, Xu Shan, Li Hui, Soens Zachry Tore, Wang Keqing, Li Yumei, Dong Fangtian, Chen Rui, et al. , Investigative ophthalmology & visual science, 2015 Jun, Volume 56, Issue 6, p.3642-55, (2015) Abstract
Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion., Xi, Ruibin, Hadjipanayis Angela G., Luquette Lovelace J., Kim Tae-Min, Lee Eunjung, Zhang Jianhua, Johnson Mark D., Muzny Donna M., Wheeler David A., Gibbs Richard A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2011 Nov 15, Volume 108, Issue 46, p.E1128-36, (2011) Abstract
DANPOS: dynamic analysis of nucleosome position and occupancy by sequencing., Chen, Kaifu, Xi Yuanxin, Pan Xuewen, Li Zhaoyu, Kaestner Klaus, Tyler Jessica, Dent Sharon, He Xiangwei, and Li Wei , Genome research, 2013 Feb, Volume 23, Issue 2, p.341-51, (2013) Abstract
De Novo Truncating Mutations in AHDC1 in Individuals with Syndromic Expressive Language Delay, Hypotonia, and Sleep Apnea., Xia, Fan, Bainbridge Matthew N., Tan Tiong Yang, Wangler Michael F., Scheuerle Angela E., Zackai Elaine H., Harr Margaret H., Sutton Reid V., Nalam Roopa L., Zhu Wenmiao, et al. , American journal of human genetics, 2014 May 1, Volume 94, Issue 5, p.784-9, (2014) Abstract
Deletion screening at the hypoxanthine-guanine phosphoribosyltransferase locus in Chinese hamster cells using the polymerase chain reaction., Xu, Z. D., Yu Y. J., Hsie A. W., Caskey C. T., Rossiter B., and Gibbs R. A. , Teratogenesis, carcinogenesis, and mutagenesis, 1989, Volume 9, Issue 3, p.177-87, (1989) Abstract
Disruptive TP53 mutation is associated with aggressive disease characteristics in an orthotopic murine model of oral tongue cancer., Sano, Daisuke, Xie Tong-Xin, Ow Thomas J., Zhao Mei, Pickering Curtis R., Zhou Ge, Sandulache Vlad C., Wheeler David A., Gibbs Richard A., Caulin Carlos, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2011 Nov 1, Volume 17, Issue 21, p.6658-70, (2011) Abstract
A Drosophila genetic resource of mutants to study mechanisms underlying human genetic diseases., Yamamoto, Shinya, Jaiswal Manish, Charng Wu-Lin, Gambin Tomasz, Karaca Ender, Mirzaa Ghayda, Wiszniewski Wojciech, Sandoval Hector, Haelterman Nele A., Xiong Bo, et al. , Cell, 2014 Sep 25, Volume 159, Issue 1, p.200-14, (2014) Abstract
Effect of disruption of a gene encoding an autolysin of Enterococcus faecalis OG1RF., Qin, X., Singh K. V., Xu Y., Weinstock G. M., and Murray B. E. , Antimicrobial agents and chemotherapy, 1998 Nov, Volume 42, Issue 11, p.2883-8, (1998) Abstract
Effect of disruption of a gene encoding an autolysin of Enterococcus faecalis OG1RF., Qin, X., Singh K. V., Xu Y., Weinstock G. M., and Murray B. E. , Antimicrobial agents and chemotherapy, 1998 Nov, Volume 42, Issue 11, p.2883-8, (1998) Abstract
Effects of TP53 mutational status on gene expression patterns across 10 human cancer types., Parikh, Neha, Hilsenbeck Susan, Creighton Chad J., Dayaram Tajhal, Shuck Ryan, Shinbrot Eve, Xi Liu, Gibbs Richard A., Wheeler David A., and Donehower Lawrence A. , The Journal of pathology, 2014 Apr, Volume 232, Issue 5, p.522-33, (2014) Abstract
Efficient isolation of targeted Caenorhabditis elegans deletion strains using highly thermostable restriction endonucleases and PCR., Wei, Aguan, Yuan Alex, Fawcett Gloria, Butler Alice, Davis Theodore, Xu Shuang-yong, and Salkoff Lawrence , Nucleic acids research, 2002 Oct 15, Volume 30, Issue 20, p.e110, (2002) Abstract
An entropy-based genome-wide transmission/disequilibrium test., Zhao, Jinying, Boerwinkle Eric, and Xiong Momiao , Human genetics, 2007 May, Volume 121, Issue 3-4, p.357-67, (2007) Abstract
An entropy-based statistic for genomewide association studies., Zhao, Jinying, Boerwinkle Eric, and Xiong Momiao , American journal of human genetics, 2005 Jul, Volume 77, Issue 1, p.27-40, (2005) Abstract
Epigenomic profiling of young and aged HSCs reveals concerted changes during aging that reinforce self-renewal., Sun, Deqiang, Luo Min, Jeong Mira, Rodriguez Benjamin, Xia Zheng, Hannah Rebecca, Wang Hui, Le Thuc, Faull Kym F., Chen Rui, et al. , Cell stem cell, 2014 May 1, Volume 14, Issue 5, p.673-88, (2014) Abstract
Epistasis analysis for quantitative traits by functional regression model., Zhang, Futao, Boerwinkle Eric, and Xiong Momiao , Genome research, 2014 May 6, (2014) Abstract

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