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Publications

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Book Chapter
Maintenance and replication during latency., Hu, J., Lieberman PM, and Renne R. , Maintenance and replication during latency., Cambridge, (2007) Abstract
Conference Paper
Genome-wide analysis of stepwise hepatocarcinogenesis using next generation sequencer, Midorikawa, Yutaka, Yamamoto Shogo, Ueda Hiroki, Sonoda Kotaro, Tsuji Shingo, Tatsuno Kenji, Shibata Tatsuhiro, Covington Kyle, Wheeler David A., Takayama Tadatoshi, et al. , HEPATOLOGY, Volume 58, p.396A–396A, (2013)
Journal Article
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer., Pomerantz, Mark M., Ahmadiyeh Nasim, Jia Li, Herman Paula, Verzi Michael P., Doddapaneni Harshavardhan, Beckwith Christine A., Chan Jennifer A., Hills Adam, Davis Matt, et al. , Nature genetics, 2009 Aug, Volume 41, Issue 8, p.882-4, (2009) Abstract
Acquisition of uncharacterized sequences from Candidatus liberibacter, an unculturable bacterium, using an improved genomic walking method., Lin, Hong, Doddapaneni Harshavardhan, Bai Xianjing, Yao Jiqiang, Zhao Xiaolong, and Civerolo Edwin L. , Molecular and cellular probes, 2008 Feb, Volume 22, Issue 1, p.30-7, (2008) Abstract
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms., Yang, Jack Y., Dunker A., Liu Jun S., Qin Xiang, Arabnia Hamid R., Yang William, Niemierko Andrzej, Chen Zhongxue, Luo Zuojie, Wang Liangjiang, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.I1, (2014) Abstract
Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas., Haecker, Irina, Gay Lauren A., Yang Yajie, Hu Jianhong, Morse Alison M., McIntyre Lauren M., and Renne Rolf , PLoS pathogens, 2012, Volume 8, Issue 8, p.e1002884, (2012) Abstract
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
Analysis of loss-of-function variants and 20 risk factor phenotypes in 8,554 individuals identifies loci influencing chronic disease., Li, Alexander H., Morrison Alanna C., Kovar Christie, Cupples Adrienne L., Brody Jennifer A., Polfus Linda M., Yu Bing, Metcalf Ginger, Muzny Donna, Veeraraghavan Narayanan, et al. , Nature genetics, 2015 Apr 27, (2015) Abstract
Analysis of prostate-specific antigen transcripts in chimpanzees, cynomolgus monkeys, baboons, and african green monkeys., Mubiru, James N., Yang Alice S., Olsen Christian, Nayak Sudhir, Livi Carolina B., Dick Edward J., Owston Michael, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , PloS one, 2014, Volume 9, Issue 4, p.e94522, (2014) Abstract
Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa., Doddapaneni, Harshavardhan, Yao Jiqiang, Lin Hong, Walker Andrew M., and Civerolo Edwin L. , BMC genomics, 2006, Volume 7, p.225, (2006) Abstract
Analysis of the Par2 modifier of pulmonary adenoma formation in mice., Wang, Min, Wang Yian, You Ming, and Devereux Theodora R. , Experimental lung research, 2005 Mar, Volume 31, Issue 2, p.193-204, (2005) Abstract
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species., Bradnam, Keith R., Fass Joseph N., Alexandrov Anton, Baranay Paul, Bechner Michael, Birol Inanç, Boisvert Sébastien, Chapman Jarrod A., Chapuis Guillaume, Chikhi Rayan, et al. , GigaScience, 2013 Jul 22, Volume 2, Issue 1, p.10, (2013) Abstract
Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies., Yu, Bing, Barbalic Maja, Brautbar Ariel, Nambi Vijay, Hoogeveen Ron C., Tang Weihong, Mosley Thomas H., Rotter Jerome I., deFilippi Christopher R., O'Donnell Christopher J., et al. , Circulation. Cardiovascular genetics, 2013 Feb, Volume 6, Issue 1, p.82-8, (2013) Abstract
Association of Rare Loss-Of-Function Alleles in HAL, Serum Histidine Levels and Incident Coronary Heart Disease., Yu, Bing, Li Alexander H., Muzny Donna, Veeraraghavan Narayanan, de Vries Paul S., Bis Joshua C., Musani Solomon K., Alexander Danny, Morrison Alanna C., Franco Oscar H., et al. , Circulation. Cardiovascular genetics, 2015 Jan 8, (2015) Abstract
Associations between metabolomic compounds and incident heart failure among African Americans: the ARIC Study., Zheng, Yan, Yu Bing, Alexander Danny, Manolio Teri A., Aguilar David, Coresh Josef, Heiss Gerardo, Boerwinkle Eric, and Nettleton Jennifer A. , American journal of epidemiology, 2013 Aug 15, Volume 178, Issue 4, p.534-42, (2013) Abstract
Atlas2 Cloud: a framework for personal genome analysis in the cloud., Evani, Uday S., Challis Danny, Yu Jin, Jackson Andrew R., Paithankar Sameer, Bainbridge Matthew N., Jakkamsetti Adinarayana, Pham Peter, Coarfa Cristian, Milosavljevic Aleksandar, et al. , BMC genomics, 2012, Volume 13 Suppl 6, p.S19, (2012) Abstract
Best practices and joint calling of the HumanExome BeadChip: the CHARGE Consortium., Grove, Megan L., Yu Bing, Cochran Barbara J., Haritunians Talin, Bis Joshua C., Taylor Kent D., Hansen Mark, Borecki Ingrid B., Cupples Adrienne L., Fornage Myriam, et al. , PloS one, 2013, Volume 8, Issue 7, p.e68095, (2013) Abstract
Bioactivity and Bioavailability of Ginsenosides are Dependent on the Glycosidase Activities of the A/J Mouse Intestinal Microbiome Defined by Pyrosequencing., Niu, Tao, Smith Diane L., Yang Zhen, Gao Song, Yin Taijun, Jiang Zhi-Hong, You Ming, Gibbs Richard A., Petrosino Joseph F., and Hu Ming , Pharmaceutical research, 2013 Mar, Volume 30, Issue 3, p.836-46, (2013) Abstract
Biological characterization and next-generation genome sequencing of the unclassified Cotia virus SPAn232 (Poxviridae)., Afonso, Priscila P., Silva Patrícia M., Schnellrath Laila C., Jesus Desyreé M., Hu Jianhong, Yang Yajie, Renne Rolf, Attias Marcia, Condit Richard C., Moussatché Nissin, et al. , Journal of virology, 2012 May, Volume 86, Issue 9, p.5039-54, (2012) Abstract
Calpain-10 is a component of the obesity-related quantitative trait locus Adip1., Cheverud, James M., Fawcett Gloria L., Jarvis Joseph P., Norgard Elizabeth A., Pavlicev Mihaela, Pletscher Susan L., Polonsky Kenneth S., Ye Honggang, Bell Graeme I., and Semenkovich Clay F. , Journal of lipid research, 2010 May, Volume 51, Issue 5, p.907-13, (2010) Abstract
The Cancer Genome Atlas Pan-Cancer analysis project., Chang, Kyle, Creighton Chad J., Davis Caleb F., Donehower Lawrence, Drummond Jennifer, Wheeler David, Ally Adrian, Balasundaram Miruna, Birol Inanc, Butterfield Yaron S. N., et al. , Nature genetics, 2013 Sep 26, Volume 45, Issue 10, p.1113-20, (2013)
A catalog of reference genomes from the human microbiome., Nelson, Karen E., Weinstock George M., Highlander Sarah K., Worley Kim C., Creasy Heather Huot, Wortman Jennifer Russo, Rusch Douglas B., Mitreva Makedonka, Sodergren Erica, Chinwalla Asif T., et al. , Science (New York, N.Y.), 2010 May 21, Volume 328, Issue 5981, p.994-9, (2010) Abstract
Characterization of HPV and host genome interactions in primary head and neck cancers., Parfenov, Michael, Pedamallu Chandra Sekhar, Gehlenborg Nils, Freeman Samuel S., Danilova Ludmila, Bristow Christopher A., Lee Semin, Hadjipanayis Angela G., Ivanova Elena V., Wilkerson Matthew D., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2014 Oct 13, (2014) Abstract
Characterization of single-nucleotide variation in Indian-origin rhesus macaques (Macaca mulatta)., Fawcett, Gloria L., Raveendran Muthuswamy, Rio Deiros David, Chen David, Yu Fuli, Harris Ronald Alan, Ren Yanru, Muzny Donna M., Reid Jeffrey G., Wheeler David A., et al. , BMC genomics, 2011, Volume 12, p.311, (2011) Abstract
Characterization of the rat GRIK5 kainate receptor subunit gene promoter and its intragenic regions involved in neural cell specificity., Chew, L. J., Yuan X., Scherer S. E., Qie L., Huang F., Hayes W. P., and Gallo V. , The Journal of biological chemistry, 2001 Nov 9, Volume 276, Issue 45, p.42162-71, (2001) Abstract


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