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Publications

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Journal Article
Patterns and rates of exonic de novo mutations in autism spectrum disorders., Neale, Benjamin M., Kou Yan, Liu Li, Ma'ayan Avi, Samocha Kaitlin E., Sabo Aniko, Lin Chiao-Feng, Stevens Christine, Wang Li-San, Makarov Vladimir, et al. , Nature, 2012 May 10, Volume 485, Issue 7397, p.242-5, (2012) Abstract
PDX-1 is a therapeutic target for pancreatic cancer, insulinoma and islet neoplasia using a novel RNA interference platform., Liu, Shi-He, Rao Donald D., Nemunaitis John, Senzer Neil, Zhou Guisheng, Dawson David, Gingras Marie-Claude, Wang Zhaohui, Gibbs Richard, Norman Michael, et al. , PloS one, 2012, Volume 7, Issue 8, p.e40452, (2012) Abstract
PDX-1: demonstration of oncogenic properties in pancreatic cancer., Liu, Shi-He, Patel Sanjeet, Gingras Marie-Claude, Nemunaitis John, Zhou Guisheng, Chen Changyi, Li Min, Fisher William, Gibbs Richard, and Brunicardi Charles F. , Cancer, 2011 Feb 15, Volume 117, Issue 4, p.723-33, (2011) Abstract
A physical map of the chicken genome., Wallis, John W., Aerts Jan, Groenen Martien A. M., Crooijmans Richard P. M. A., Layman Dan, Graves Tina A., Scheer Debra E., Kremitzki Colin, Fedele Mary J., Mudd Nancy K., et al. , Nature, 2004 Dec 9, Volume 432, Issue 7018, p.761-4, (2004) Abstract
PipMaker--a web server for aligning two genomic DNA sequences., Schwartz, S., Zhang Z., Frazer K. A., Smit A., Riemer C., Bouck J., Gibbs R., Hardison R., and Miller W. , Genome research, 2000 Apr, Volume 10, Issue 4, p.577-86, (2000) Abstract
Pooled genomic indexing of rhesus macaque., Milosavljevic, Aleksandar, Harris Ronald A., Sodergren Erica J., Jackson Andrew R., Kalafus Ken J., Hodgson Anne, Cree Andrew, Dai Weilie, Csuros Miklos, Zhu Baoli, et al. , Genome research, 2005 Feb, Volume 15, Issue 2, p.292-301, (2005) Abstract
Pooled genomic indexing of rhesus macaque., Milosavljevic, Aleksandar, Harris Ronald A., Sodergren Erica J., Jackson Andrew R., Kalafus Ken J., Hodgson Anne, Cree Andrew, Dai Weilie, Csuros Miklos, Zhu Baoli, et al. , Genome research, 2005 Feb, Volume 15, Issue 2, p.292-301, (2005) Abstract
Positional cloning of the major quantitative trait locus underlying lung tumor susceptibility in mice., Zhang, Zhongqiu, Futamura Manabu, Vikis Haris G., Wang Min, Li Jie, Wang Yian, Guan Kun-Liang, and You Ming , Proceedings of the National Academy of Sciences of the United States of America, 2003 Oct 28, Volume 100, Issue 22, p.12642-7, (2003) Abstract
Possible race and gender divergence in association of genetic variations with plasma von Willebrand factor: a study of ARIC and 1000 genome cohorts., Zhou, Zhou, Yu Fuli, Buchanan Ashley, Fu Yuanyuan, Campos Marco, Wu Kenneth K., Chambless Lloyd E., Folsom Aaron R., Boerwinkle Eric, and Dong Jing-fei , PloS one, 2014, Volume 9, Issue 1, p.e84810, (2014) Abstract
Pulmonary alveolar proteinosis caused by deletion of the GM-CSFRalpha gene in the X chromosome pseudoautosomal region 1., Martinez-Moczygemba, Margarita, Doan Minh L., Elidemir Okan, Fan Leland L., Cheung Sau Wai, Lei Jonathan T., Moore James P., Tavana Ghamartaj, Lewis Lora R., Zhu Yiming, et al. , The Journal of experimental medicine, 2008 Nov 24, Volume 205, Issue 12, p.2711-6, (2008) Abstract
Rapid identification of heterozygous mutations in Drosophila melanogaster using genomic capture sequencing., Wang, Hui, Chattopadhyay Abanti, Li Zhe, Daines Bryce, Li Yumei, Gao Chunxu, Gibbs Richard, Zhang Kun, and Chen Rui , Genome research, 2010 Jul, Volume 20, Issue 7, p.981-8, (2010) Abstract
Recurrent CNVs and SNVs at the NPHP1 Locus Contribute Pathogenic Alleles to Bardet-Biedl Syndrome, Lindstrand, Anna, Davis Erica E., Carvalho Claudia M.B., Pehlivan Davut, Willer Jason R., Tsai I-Chun, Ramanathan Subhadra, Zuppan Craig, Sabo Aniko, Muzny Donna, et al. , The American Journal of Human Genetics, 05/2014, Volume 94, Issue 5, p.745 - 754, (2014)
A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia., Shah, Sohela, Schrader Kasmintan A., Waanders Esmé, Timms Andrew E., Vijai Joseph, Miething Cornelius, Wechsler Jeremy, Yang Jun, Hayes James, Klein Robert J., et al. , Nature genetics, 2013 Oct, Volume 45, Issue 10, p.1226-31, (2013) Abstract
REGγ is associated with multiple oncogenic pathways in human cancers., He, Jing, Cui Long, Zeng Yu, Wang Guangqiang, Zhou Ping, Yang Yuanyuan, Ji Lei, Zhao Yanyan, Chen Jiwu, Wang Zhuo, et al. , BMC cancer, 2012, Volume 12, p.75, (2012) Abstract
Rise and fall of subclones from diagnosis to relapse in pediatric B-acute lymphoblastic leukaemia., Ma, Xiaotu, Edmonson Michael, Yergeau Donald, Muzny Donna M., Hampton Oliver A., Rusch Michael, Song Guangchun, Easton John, Harvey Richard C., Wheeler David A., et al. , Nature communications, 2015, Volume 6, p.6604, (2015) Abstract
A second generation human haplotype map of over 3.1 million SNPs., Frazer, Kelly A., Ballinger Dennis G., Cox David R., Hinds David A., Stuve Laura L., Gibbs Richard A., Belmont John W., Boudreau Andrew, Hardenbol Paul, Leal Suzanne M., et al. , Nature, 2007 Oct 18, Volume 449, Issue 7164, p.851-61, (2007) Abstract
Serum Metabolomic Profiling and Incident CKD among African Americans., Yu, Bing, Zheng Yan, Nettleton Jennifer A., Alexander Danny, Coresh Josef, and Boerwinkle Eric , Clinical journal of the American Society of Nephrology : CJASN, 2014 Aug 7, Volume 9, Issue 8, p.1410-7, (2014) Abstract
Shedding genomic light on Aristotle's lantern., Sodergren, Erica, Shen Yufeng, Song Xingzhi, Zhang Lan, Gibbs Richard A., and Weinstock George M. , Developmental biology, 2006 Dec 1, Volume 300, Issue 1, p.2-8, (2006) Abstract
The sheep genome illuminates biology of the rumen and lipid metabolism., Jiang, Yu, Xie Min, Chen Wenbin, Talbot Richard, Maddox Jillian F., Faraut Thomas, Wu Chunhua, Muzny Donna M., Li Yuxiang, Zhang Wenguang, et al. , Science (New York, N.Y.), 2014 Jun 6, Volume 344, Issue 6188, p.1168-73, (2014) Abstract
SNPdetector: a software tool for sensitive and accurate SNP detection., Zhang, Jinghui, Wheeler David A., Yakub Imtiaz, Wei Sharon, Sood Raman, Rowe William, Liu Paul P., Gibbs Richard A., and Buetow Kenneth H. , PLoS computational biology, 2005 Oct, Volume 1, Issue 5, p.e53, (2005) Abstract
The soluble epoxide hydrolase gene harbors sequence variation associated with susceptibility to and protection from incident ischemic stroke., Fornage, Myriam, Lee Craig R., Doris Peter A., Bray Molly S., Heiss Gerardo, Zeldin Darryl C., and Boerwinkle Eric , Human molecular genetics, 2005 Oct 1, Volume 14, Issue 19, p.2829-37, (2005) Abstract
Somatic and germline instability of the ATTCT repeat in spinocerebellar ataxia type 10., Matsuura, Tohru, Fang Ping, Lin Xi, Khajavi Mehrdad, Tsuji Kuniko, Rasmussen Astrid, Grewal Raji P., Achari Madhureeta, Alonso Maria E., Pulst Stefan M., et al. , American journal of human genetics, 2004 Jun, Volume 74, Issue 6, p.1216-24, (2004) Abstract
Somatic mutations affect key pathways in lung adenocarcinoma., Ding, Li, Getz Gad, Wheeler David A., Mardis Elaine R., McLellan Michael D., Cibulskis Kristian, Sougnez Carrie, Greulich Heidi, Muzny Donna M., Morgan Margaret B., et al. , Nature, 2008 Oct 23, Volume 455, Issue 7216, p.1069-75, (2008) Abstract
Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences., Scaduto, Diane I., Brown Jeremy M., Haaland Wade C., Zwickl Derrick J., Hillis David M., and Metzker Michael L. , Proceedings of the National Academy of Sciences of the United States of America, 2010 Dec 14, Volume 107, Issue 50, p.21242-7, (2010) Abstract
Squamous Cell Carcinoma of the Oral Tongue in Young Non-Smokers Is Genomically Similar to Tumors in Older Smokers, Pickering, C. R., Zhang J., Neskey D. M., Zhao M., Jasser S. A., Wang J., Ward A., Tsai C. J., Ortega Alves M. V., Zhou J. H., et al. , Clinical Cancer Research, 07/2014, Volume 20, Issue 14, p.3842 - 3848, (2014)


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