Title | The common marmoset genome provides insight into primate biology and evolution. |
Publication Type | Journal Article |
Year of Publication | 2014 |
Corporate Authors | Marmoset Genome Sequencing and Analysis Consortium |
Journal | Nat Genet |
Volume | 46 |
Issue | 8 |
Pagination | 850-7 |
Date Published | 2014 Aug |
ISSN | 1546-1718 |
Keywords | Amino Acid Sequence, Animals, Callithrix, Evolution, Molecular, Female, Genome, MicroRNAs, Molecular Sequence Data, Phylogeny, Polymorphism, Single Nucleotide, Reproduction, Sequence Analysis, DNA |
Abstract | We report the whole-genome sequence of the common marmoset (Callithrix jacchus). The 2.26-Gb genome of a female marmoset was assembled using Sanger read data (6×) and a whole-genome shotgun strategy. A first analysis has permitted comparison with the genomes of apes and Old World monkeys and the identification of specific features that might contribute to the unique biology of this diminutive primate, including genetic changes that may influence body size, frequent twinning and chimerism. We observed positive selection in growth hormone/insulin-like growth factor genes (growth pathways), respiratory complex I genes (metabolic pathways), and genes encoding immunobiological factors and proteases (reproductive and immunity pathways). In addition, both protein-coding and microRNA genes related to reproduction exhibited evidence of rapid sequence evolution. This genome sequence for a New World monkey enables increased power for comparative analyses among available primate genomes and facilitates biomedical research application. |
DOI | 10.1038/ng.3042 |
Alternate Journal | Nat Genet |
PubMed ID | 25038751 |
PubMed Central ID | PMC4138798 |
Grant List | P51 RR000167 / RR / NCRR NIH HHS / United States U41 HG002371 / HG / NHGRI NIH HHS / United States 260372 / ERC_ / European Research Council / International U54 HG003273 / HG / NHGRI NIH HHS / United States R01 DK077639 / DK / NIDDK NIH HHS / United States U54 HG003079 / HG / NHGRI NIH HHS / United States R01 DK089201 / DK / NIDDK NIH HHS / United States R01 HG002385 / HG / NHGRI NIH HHS / United States / HHMI / Howard Hughes Medical Institute / United States R01 GM059290 / GM / NIGMS NIH HHS / United States 095908 / WT_ / Wellcome Trust / United Kingdom K99 HG005846 / HG / NHGRI NIH HHS / United States P51 OD011133 / OD / NIH HHS / United States / WT_ / Wellcome Trust / United Kingdom |
The common marmoset genome provides insight into primate biology and evolution.
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