Recurrent duplication-driven transposition of DNA during hominoid evolution.

TitleRecurrent duplication-driven transposition of DNA during hominoid evolution.
Publication TypeJournal Article
Year of Publication2006
AuthorsJohnson, ME, Cheng, Z, V Morrison, A, Scherer, SE, Ventura, M, Gibbs, RA, Green, ED, Eichler, EE
Corporate AuthorsNational Institute of Health Intramural Sequencing Center Comparative Sequencing Program
JournalProc Natl Acad Sci U S A
Volume103
Issue47
Pagination17626-31
Date Published2006 Nov 21
ISSN0027-8424
KeywordsAnimals, Base Sequence, Biological Evolution, Chromosomes, Human, Pair 16, DNA, DNA Transposable Elements, Evolution, Molecular, Gene Duplication, Hominidae, Humans, Molecular Sequence Data, Phylogeny, Sequence Alignment, Sequence Analysis, DNA
Abstract

The underlying mechanism by which the interspersed pattern of human segmental duplications has evolved is unknown. Based on a comparative analysis of primate genomes, we show that a particular segmental duplication (LCR16a) has been the source locus for the formation of the majority of intrachromosomal duplications blocks on human chromosome 16. We provide evidence that this particular segment has been active independently in each great ape and human lineage at different points during evolution. Euchromatic sequence that flanks sites of LCR16a integration are frequently lineage-specific duplications. This process has mobilized duplication blocks (15-200 kb in size) to new genomic locations in each species. Breakpoint analysis of lineage-specific insertions suggests coordinated deletion of repeat-rich DNA at the target site, in some cases deleting genes in that species. Our data support a model of duplication where the probability that a segment of DNA becomes duplicated is determined by its proximity to core duplicons, such as LCR16a.

DOI10.1073/pnas.0605426103
Alternate JournalProc. Natl. Acad. Sci. U.S.A.
PubMed ID17101969
PubMed Central IDPMC1693797
Grant ListR01 GM058815 / GM / NIGMS NIH HHS / United States
GM58815 / GM / NIGMS NIH HHS / United States
/ / Intramural NIH HHS / United States