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Publications

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2012
2008
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse., Durfee, Tim, Nelson Richard, Baldwin Schuyler, Plunkett Guy, Burland Valerie, Mau Bob, Petrosino Joseph F., Qin Xiang, Muzny Donna M., Ayele Mulu, et al. , Journal of bacteriology, 2008 Apr, Volume 190, Issue 7, p.2597-606, (2008) Abstract
2007
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus., Highlander, Sarah K., Hultén Kristina G., Qin Xiang, Jiang Huaiyang, Yerrapragada Shailaja, Mason Edward O., Shang Yue, Williams Tiffany M., Fortunov Régine M., Liu Yamei, et al. , BMC microbiology, 2007, Volume 7, p.99, (2007) Abstract
High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis., Aronstein, K. A., Murray K. D., de León J. H., Qin X., and Weinstock G. M. , Mycologia, 2007 Jul-Aug, Volume 99, Issue 4, p.553-61, (2007) Abstract
1991
An overview of industrial accidents with particular reference to facial trauma., Shalhoub, S. Y. , Australian dental journal, 1991 Dec, Volume 36, Issue 6, p.445-50, (1991) Abstract
2007
Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium., Karpathy, Sandor E., Qin Xiang, Gioia Jason, Jiang Huaiyang, Liu Yamei, Petrosino Joseph F., Yerrapragada Shailaja, Fox George E., Haake Susan Kinder, Weinstock George M., et al. , PloS one, 2007, Volume 2, Issue 7, p.e659, (2007) Abstract
2006
Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis., Qin, X., Evans J. D., Aronstein K. A., Murray K. D., and Weinstock G. M. , Insect molecular biology, 2006 Oct, Volume 15, Issue 5, p.715-8, (2006) Abstract
The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny., Gioia, Jason, Qin Xiang, Jiang Huaiyang, Clinkenbeard Kenneth, Lo Reggie, Liu Yamei, Fox George E., Yerrapragada Shailaja, McLeod Michael P., McNeill Thomas Z., et al. , Journal of bacteriology, 2006 Oct, Volume 188, Issue 20, p.7257-66, (2006) Abstract
2004
Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae., McLeod, Michael P., Qin Xiang, Karpathy Sandor E., Gioia Jason, Highlander Sarah K., Fox George E., McNeill Thomas Z., Jiang Huaiyang, Muzny Donna, Jacob Leni S., et al. , Journal of bacteriology, 2004 Sep, Volume 186, Issue 17, p.5842-55, (2004) Abstract
2002
Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice., Sifri, Costi D., Mylonakis Eleftherios, Singh Kavindra V., Qin Xiang, Garsin Danielle A., Murray Barbara E., Ausubel Frederick M., and Calderwood Stephen B. , Infection and immunity, 2002 Oct, Volume 70, Issue 10, p.5647-50, (2002) Abstract
The Enterococcus faecalis fsrB gene, a key component of the fsr quorum-sensing system, is associated with virulence in the rabbit endophthalmitis model., Mylonakis, Eleftherios, Engelbert Michael, Qin Xiang, Sifri Costi D., Murray Barbara E., Ausubel Frederick M., Gilmore Michael S., and Calderwood Stephen B. , Infection and immunity, 2002 Aug, Volume 70, Issue 8, p.4678-81, (2002) Abstract
2001
A simple model host for identifying Gram-positive virulence factors., Garsin, D. A., Sifri C. D., Mylonakis E., Qin X., Singh K. V., Murray B. E., Calderwood S. B., and Ausubel F. M. , Proceedings of the National Academy of Sciences of the United States of America, 2001 Sep 11, Volume 98, Issue 19, p.10892-7, (2001) Abstract
Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF., Qin, X., Singh K. V., Weinstock G. M., and Murray B. E. , Journal of bacteriology, 2001 Jun, Volume 183, Issue 11, p.3372-82, (2001) Abstract
2000
Enterococcus faecalis adhesin, ace, mediates attachment to extracellular matrix proteins collagen type IV and laminin as well as collagen type I., Nallapareddy, S. R., Qin X., Weinstock G. M., Höök M., and Murray B. E. , Infection and immunity, 2000 Sep, Volume 68, Issue 9, p.5218-24, (2000) Abstract
Effects of Enterococcus faecalis fsr genes on production of gelatinase and a serine protease and virulence., Qin, X., Singh K. V., Weinstock G. M., and Murray B. E. , Infection and immunity, 2000 May, Volume 68, Issue 5, p.2579-86, (2000) Abstract
Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis., Xu, Y., Singh K. V., Qin X., Murray B. E., and Weinstock G. M. , Infection and immunity, 2000 Feb, Volume 68, Issue 2, p.815-23, (2000) Abstract
1998
Generation and testing of mutants of Enterococcus faecalis in a mouse peritonitis model., Singh, K. V., Qin X., Weinstock G. M., and Murray B. E. , The Journal of infectious diseases, 1998 Nov, Volume 178, Issue 5, p.1416-20, (1998) Abstract
Effect of disruption of a gene encoding an autolysin of Enterococcus faecalis OG1RF., Qin, X., Singh K. V., Xu Y., Weinstock G. M., and Murray B. E. , Antimicrobial agents and chemotherapy, 1998 Nov, Volume 42, Issue 11, p.2883-8, (1998) Abstract
2007
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032., Gioia, Jason, Yerrapragada Shailaja, Qin Xiang, Jiang Huaiyang, Igboeli Okezie C., Muzny Donna, Dugan-Rocha Shannon, Ding Yan, Hawes Alicia, Liu Wen, et al. , PloS one, 2007, Volume 2, Issue 9, p.e928, (2007) Abstract
2005
The genome of the social amoeba Dictyostelium discoideum., Eichinger, L., Pachebat J. A., Glöckner G., Rajandream M. - A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., et al. , Nature, 2005 May 5, Volume 435, Issue 7038, p.43-57, (2005) Abstract
2004
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC)., Gerhard, Daniela S., Wagner Lukas, Feingold Elise A., Shenmen Carolyn M., Grouse Lynette H., Schuler Greg, Klein Steven L., Old Susan, Rasooly Rebekah, Good Peter, et al. , Genome research, 2004 Oct, Volume 14, Issue 10B, p.2121-7, (2004) Abstract
2003
Sequence and structure of the extrachromosomal palindrome encoding the ribosomal RNA genes in Dictyostelium., Sucgang, Richard, Chen Guokai, Liu Wen, Lindsay Ryan, Lu Jing, Muzny Donna, Shaulsky Gad, Loomis William, Gibbs Richard, and Kuspa Adam , Nucleic acids research, 2003 May 1, Volume 31, Issue 9, p.2361-8, (2003) Abstract
2002
Initial sequencing and comparative analysis of the mouse genome., Waterston, Robert H., Lindblad-Toh Kerstin, Birney Ewan, Rogers Jane, Abril Josep F., Agarwal Pankaj, Agarwala Richa, Ainscough Rachel, Alexandersson Marina, An Peter, et al. , Nature, 2002 Dec 5, Volume 420, Issue 6915, p.520-62, (2002) Abstract
Glass bead purification of plasmid template DNA for high throughput sequencing of mammalian genomes., Dederich, Debra A., Okwuonu Geoffrey, Garner Toni, Denn Amanda, Sutton Angelica, Escotto Michael, Martindale Ashley, Delgado Oliver, Muzny Donna M., Gibbs Richard A., et al. , Nucleic acids research, 2002 Apr 1, Volume 30, Issue 7, p.e32, (2002) Abstract
1998
Using BODIPY dye-primer chemistry in large-scale sequencing., Muzny, D. M., Metzker M. L., Bouck J., Gorrell J. H., Ding Y., Maxim E., and Gibbs R. A. , IEEE engineering in medicine and biology magazine : the quarterly magazine of the Engineering in Medicine & Biology Society, 1998 Nov-Dec, Volume 17, Issue 6, p.88-93, (1998)


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