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Publications

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2015
Identifying gene disruptions in novel balanced de novo constitutional translocations in childhood cancer patients by whole-genome sequencing., Ritter, Deborah I., Haines Katherine, Cheung Hannah, Davis Caleb F., Lau Ching C., Berg Jonathan S., Brown Chester W., Thompson Patrick A., Gibbs Richard, Wheeler David A., et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2015 Jan 8, (2015) Abstract
Identifying gene disruptions in novel balanced de novo constitutional translocations in childhood cancer patients by whole-genome sequencing., Ritter, Deborah I., Haines Katherine, Cheung Hannah, Davis Caleb F., Lau Ching C., Berg Jonathan S., Brown Chester W., Thompson Patrick A., Gibbs Richard, Wheeler David A., et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2015 Jan 8, (2015) Abstract
Initial testing (stage 1) of the PARP inhibitor BMN 673 by the pediatric preclinical testing program: PALB2 mutation predicts exceptional in vivo response to BMN 673., Smith, Malcolm A., Hampton Oliver A., Reynolds Patrick C., Kang Min H., Maris John M., Gorlick Richard, Kolb Anders E., Lock Richard, Carol Hernan, Keir Stephen T., et al. , Pediatric blood & cancer, 2015 Jan, Volume 62, Issue 1, p.91-8, (2015) Abstract
Interaction between GSTT1 and GSTP1 allele variants as a risk modulating-factor for autism spectrum disorders., Rahbar, Mohammad H., Samms-Vaughan Maureen, Ma Jianzhong, Bressler Jan, Loveland Katherine A., Hessabi Manouchehr, Dickerson Aisha S., Grove Megan L., Shakespeare-Pellington Sydonnie, Beecher Compton, et al. , Research in autism spectrum disorders, 2015 Apr 1, Volume 12, p.1-9, (2015) Abstract
2014
Identification of genes and pathways involved in kidney renal clear cell carcinoma., Yang, William, Yoshigoe Kenji, Qin Xiang, Liu Jun S., Yang Jack Y., Niemierko Andrzej, Deng Youping, Liu Yunlong, Dunker A., Chen Zhongxue, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.S2, (2014) Abstract
Inactivating Mutations in NPC1L1 and Protection from Coronary Heart Disease, , New England Journal of Medicine, 11/2014, p.141112140016008, (2014)
2013
Integrated genomic characterization of endometrial carcinoma., Kandoth, Cyriac, Schultz Nikolaus, Cherniack Andrew D., Akbani Rehan, Liu Yuexin, Shen Hui, Robertson Gordon A., Pashtan Itai, Shen Ronglai, Benz Christopher C., et al. , Nature, 2013 May 2, Volume 497, Issue 7447, p.67-73, (2013) Abstract
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data., Wang, Yi, Lu James, Yu Jin, Gibbs Richard A., and Yu Fuli , Genome research, 2013 May, Volume 23, Issue 5, p.833-42, (2013) Abstract
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers., Pickering, Curtis R., Zhang Jiexin, Yoo Suk Young, Bengtsson Linnea, Moorthy Shhyam, Neskey David M., Zhao Mei, Ortega Alves Marcus V., Chang Kyle, Drummond Jennifer, et al. , Cancer discovery, 2013 Jul, Volume 3, Issue 7, p.770-81, (2013) Abstract
Incidental copy-number variants identified by routine genome testing in a clinical population., Boone, Philip M., Soens Zachry T., Campbell Ian M., Stankiewicz Pawel, Cheung Sau Wai, Patel Ankita, Beaudet Arthur L., Plon Sharon E., Shaw Chad A., McGuire Amy L., et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2013 Jan, Volume 15, Issue 1, p.45-54, (2013) Abstract
Identification of a response regulator involved in surface attachment, cell-cell aggregation, exopolysaccharide production and virulence in the plant pathogen Xylella fastidiosa., Voegel, Tanja M., Doddapaneni Harshavardhan, Cheng Davis W., Lin Hong, Stenger Drake C., Kirkpatrick Bruce C., and Roper Caroline M. , Molecular plant pathology, 2013 Apr, Volume 14, Issue 3, p.256-64, (2013) Abstract
In transition: primate genomics at a time of rapid change., Rogers, Jeffrey , ILAR journal / National Research Council, Institute of Laboratory Animal Resources, 2013, Volume 54, Issue 2, p.224-33, (2013) Abstract
2012
Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae., Loconsole, Giuliana, Saldarelli Pasquale, Doddapaneni Harshavardhan, Savino Vito, Martelli Giovanni P., and Saponari Maria , Virology, 2012 Oct 10, Volume 432, Issue 1, p.162-72, (2012) Abstract
Identical genomic organization of two hemichordate hox clusters., Freeman, Robert, Ikuta Tetsuro, Wu Michael, Koyanagi Ryo, Kawashima Takeshi, Tagawa Kunifumi, Humphreys Tom, Fang Guang-Chen, Fujiyama Asao, Saiga Hidetoshi, et al. , Current biology : CB, 2012 Nov 6, Volume 22, Issue 21, p.2053-8, (2012) Abstract
An integrated map of genetic variation from 1,092 human genomes., Abecasis, Goncalo R., Auton Adam, Brooks Lisa D., DePristo Mark A., Durbin Richard M., Handsaker Robert E., Kang Hyun Min, Marth Gabor T., and McVean Gil A. , Nature, 2012 Nov 1, Volume 491, Issue 7422, p.56-65, (2012) Abstract
Identity and function of a large gene network underlying mutagenic repair of DNA breaks., Al Mamun, Abu Amar M., Lombardo Mary-Jane, Shee Chandan, Lisewski Andreas M., Gonzalez Caleb, Lin Dongxu, Nehring Ralf B., Saint-Ruf Claude, Gibson Janet L., Frisch Ryan L., et al. , Science (New York, N.Y.), 2012 Dec 7, Volume 338, Issue 6112, p.1344-8, (2012) Abstract
Identification of TP53 as an acute lymphocytic leukemia susceptibility gene through exome sequencing., Powell, Bradford C., Jiang Lichun, Muzny Donna M., Treviño Lisa R., Dreyer Zoann E., Strong Louise C., Wheeler David A., Gibbs Richard A., and Plon Sharon E. , Pediatric blood & cancer, 2012 Dec 19, (2012) Abstract
Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma., Creighton, Chad J., Hernandez-Herrera Anadulce, Jacobsen Anders, Levine Douglas A., Mankoo Parminder, Schultz Nikolaus, Du Ying, Zhang Yiqun, Larsson Erik, Sheridan Robert, et al. , PloS one, 2012, Volume 7, Issue 3, p.e34546, (2012) Abstract
An integrative variant analysis suite for whole exome next-generation sequencing data., Challis, Danny, Yu Jin, Evani Uday S., Jackson Andrew R., Paithankar Sameer, Coarfa Cristian, Milosavljevic Aleksandar, Gibbs Richard A., and Yu Fuli , BMC bioinformatics, 2012, Volume 13, p.8, (2012) Abstract
Increasing the number of URMS in genomic science; (1854F)., Murray, D., Whittington D., and Gibbs R. , 62nd Annual Meeting of The American Society of Human Genetics, San Francisco, California, (2012)
2011
Interaction of folate intake and the paraoxonase Q192R polymorphism with risk of incident coronary heart disease and ischemic stroke: the atherosclerosis risk in communities study., Luu, Hung N., Kingah Pascal L., North Kari, Boerwinkle Eric, and Volcik Kelly A. , Annals of epidemiology, 2011 Nov, Volume 21, Issue 11, p.815-23, (2011) Abstract
Immunoglobulin locus associates with serum IgG levels and albuminuria., Herring, Stacy M., Gokul Nisha, Monita Monique, Bell Rebecca, Boerwinkle Eric, Wenderfer Scott E., Braun Michael C., and Doris Peter A. , Journal of the American Society of Nephrology : JASN, 2011 May, Volume 22, Issue 5, p.881-9, (2011) Abstract
Integrated genomic analyses of ovarian carcinoma., , Nature, 2011 Jun 30, Volume 474, Issue 7353, p.609-15, (2011) Abstract
Identification of genetic susceptibility to childhood cancer through analysis of genes in parallel., Plon, Sharon E., Wheeler David A., Strong Louise C., Tomlinson Gail E., Pirics Michael, Meng Qingchang, Cheung Hannah C., Begin Phyllis R., Muzny Donna M., Lewis Lora, et al. , Cancer genetics, 2011 Jan, Volume 204, Issue 1, p.19-25, (2011) Abstract
Is low-grade serous ovarian cancer part of the tumor spectrum of hereditary breast and ovarian cancer?, Vineyard, Marisa A., Daniels Molly S., Urbauer Diana L., Deavers Michael T., Sun Charlotte C., Boerwinkle Eric, Bodurka Diane C., Gershenson David M., Crawford Jessica, and Lu Karen H. , Gynecologic oncology, 2011 Feb, Volume 120, Issue 2, p.229-32, (2011) Abstract


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