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Publications

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2010
Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs)., Syed, Khajamohiddin, Doddapaneni Harshavardhan, Subramanian Venkataramanan, Lam Ying Wai, and Yadav Jagjit S. , Biochemical and biophysical research communications, 2010 Sep 3, Volume 399, Issue 4, p.492-7, (2010) Abstract
2009
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion., Martinez, Diego, Challacombe Jean, Morgenstern Ingo, Hibbett David, Schmoll Monika, Kubicek Christian P., Ferreira Patricia, Ruiz-Duenas Francisco J., Martinez Angel T., Kersten Phil, et al. , Proceedings of the National Academy of Sciences of the United States of America, 2009 Feb 10, Volume 106, Issue 6, p.1954-9, (2009) Abstract
2008
PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences., Yao, Jiqiang, Lin Hong, Van Deynze Allen, Doddapaneni Harshavardhan, Francis Martha, Lemos Eliana Gertrudes Macedo, and Civerolo Edwin L. , BMC microbiology, 2008, Volume 8, p.185, (2008) Abstract
VitisExpDB: a database resource for grape functional genomics., Doddapaneni, Harshavardhan, Lin Hong, Walker Andrew M., Yao Jiqiang, and Civerolo Edwin L. , BMC plant biology, 2008, Volume 8, p.23, (2008) Abstract
2007
Comparative analysis of ESTs involved in grape responses to Xylella fastidiosa infection., Lin, Hong, Doddapaneni Harshavardhan, Takahashi Yuri, and Walker Andrew M. , BMC plant biology, 2007, Volume 7, p.8, (2007) Abstract
2005
2013
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee., Li-Byarlay, Hongmei, Li Yang, Stroud Hume, Feng Suhua, Newman Thomas C., Kaneda Megan, Hou Kirk K., Worley Kim C., Elsik Christine G., Wickline Samuel A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2013 Jul 30, Volume 110, Issue 31, p.12750-5, (2013) Abstract
Combined sequence-based and genetic mapping analysis of complex traits in outbred rats., Baud, Amelie, Hermsen Roel, Guryev Victor, Stridh Pernilla, Graham Delyth, McBride Martin W., Foroud Tatiana, Calderari Sophie, Diez Margarita, Ockinger Johan, et al. , Nature genetics, 2013 Jul, Volume 45, Issue 7, p.767-75, (2013) Abstract
2012
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis., Tu, Qiang, Cameron Andrew R., Worley Kim C., Gibbs Richard A., and Davidson Eric H. , Genome research, 2012 Oct, Volume 22, Issue 10, p.2079-87, (2012) Abstract
2014
Mutational landscape of aggressive cutaneous squamous cell carcinoma., Pickering, Curtis R., Zhou Jane H., Lee Jack J., Drummond Jennifer A., Peng Andrew S., Saade Rami E., Tsai Kenneth Y., Curry Jonathan, Tetzlaff Michael T., Lai Stephen Y., et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2014 Oct 10, (2014) Abstract
2011
Genome sequence of an Australian kangaroo, Macropus eugenii, provides insight into the evolution of mammalian reproduction and development., Renfree, Marilyn B., Papenfuss Anthony T., Deakin Janine E., Lindsay James, Heider Thomas, Belov Katherine, Rens Willem, Waters Paul D., Pharo Elizabeth A., Shaw Geoff, et al. , Genome biology, 2011, Volume 12, Issue 8, p.R81, (2011) Abstract
2010
Genome sequence of the pea aphid Acyrthosiphon pisum., , PLoS biology, 2010 Feb, Volume 8, Issue 2, p.e1000313, (2010) Abstract
2007
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
2006
2014
A missense mutation in HK1 leads to autosomal dominant retinitis pigmentosa., Wang, Feng, Wang Yandong, Zhang Bin, Zhao Li, Lyubasyuk Vera, Wang Keqing, Xu Mingchu, Li Yumei, Wu Frances, Wen Cindy, et al. , Investigative ophthalmology & visual science, 2014 Oct 14, (2014) Abstract
2000
The human transcript database: a catalogue of full length cDNA inserts., Bouck, J., McLeod M. P., Worley K., and Gibbs R. A. , Bioinformatics (Oxford, England), 2000 Feb, Volume 16, Issue 2, p.176-7, (2000) Abstract
1997
Large-scale concatenation cDNA sequencing., Yu, W., Andersson B., Worley K. C., Muzny D. M., Ding Y., Liu W., Ricafrente J. Y., Wentland M. A., Lennon G., and Gibbs R. A. , Genome research, 1997 Apr, Volume 7, Issue 4, p.353-8, (1997) Abstract
2014
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping., English, Adam C., Salerno William J., and Reid Jeffrey G. , BMC bioinformatics, 2014, Volume 15, p.180, (2014) Abstract
2012
Mutations in the TGF-β repressor SKI cause Shprintzen-Goldberg syndrome with aortic aneurysm., Doyle, Alexander J., Doyle Jefferson J., Bessling Seneca L., Maragh Samantha, Lindsay Mark E., Schepers Dorien, Gillis Elisabeth, Mortier Geert, Homfray Tessa, Sauls Kimberly, et al. , Nature genetics, 2012 Nov, Volume 44, Issue 11, p.1249-54, (2012) Abstract
Loss-of-function mutations in TGFB2 cause a syndromic presentation of thoracic aortic aneurysm., Lindsay, Mark E., Schepers Dorien, Bolar Nikhita Ajit, Doyle Jefferson J., Gallo Elena, Fert-Bober Justyna, Kempers Marlies J. E., Fishman Elliot K., Chen Yichun, Myers Loretha, et al. , Nature genetics, 2012 Aug, Volume 44, Issue 8, p.922-7, (2012) Abstract
2013
Deletions of recessive disease genes: CNV contribution to carrier states and disease-causing alleles., Boone, Philip M., Campbell Ian M., Baggett Brett C., Soens Zachry T., Rao Mitchell M., Hixson Patricia M., Patel Ankita, Bi Weimin, Cheung Sau Wai, Lalani Seema R., et al. , Genome research, 2013 Sep, Volume 23, Issue 9, p.1383-94, (2013) Abstract
Incidental copy-number variants identified by routine genome testing in a clinical population., Boone, Philip M., Soens Zachry T., Campbell Ian M., Stankiewicz Pawel, Cheung Sau Wai, Patel Ankita, Beaudet Arthur L., Plon Sharon E., Shaw Chad A., McGuire Amy L., et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2013 Jan, Volume 15, Issue 1, p.45-54, (2013) Abstract
Replicative mechanisms for CNV formation are error prone., Carvalho, Claudia M. B., Pehlivan Davut, Ramocki Melissa B., Fang Ping, Alleva Benjamin, Franco Luis M., Belmont John W., Hastings P. J., and Lupski James R. , Nature genetics, 2013 Nov, Volume 45, Issue 11, p.1319-26, (2013) Abstract
Detection of clinically relevant copy number variants with whole-exome sequencing., de Ligt, Joep, Boone Philip M., Pfundt Rolph, Vissers Lisenka E. L. M., Richmond Todd, Geoghegan Joel, O'Moore Kathleen, de Leeuw Nicole, Shaw Christine, Brunner Han G., et al. , Human mutation, 2013 Oct, Volume 34, Issue 10, p.1439-48, (2013) Abstract
Mutations in VRK1 Associated With Complex Motor and Sensory Axonal Neuropathy Plus Microcephaly., Gonzaga-Jauregui, Claudia, Lotze Timothy, Jamal Leila, Penney Samantha, Campbell Ian M., Pehlivan Davut, Hunter Jill V., Woodbury Suzanne L., Raymond Gerald, Adesina Adekunle M., et al. , JAMA neurology, 2013 Oct 14, (2013) Abstract


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