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Publications

2012
Direct regulation of GTP homeostasis by (p)ppGpp: a critical component of viability and stress resistance., Kriel, Allison, Bittner Alycia N., Kim Sok Ho, Liu Kuanqing, Tehranchi Ashley K., Zou Winnie Y., Rendon Samantha, Chen Rui, Tu Benjamin P., and Wang Jue D. , Molecular cell, 2012 Oct 26, Volume 48, Issue 2, p.231-41, (2012) Abstract
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche., Morin, Emmanuelle, Kohler Annegret, Baker Adam R., Foulongne-Oriol Marie, Lombard Vincent, Nagy Laszlo G., Ohm Robin A., Patyshakuliyeva Aleksandrina, Brun Annick, Aerts Andrea L., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2012 Oct 23, Volume 109, Issue 43, p.17501-6, (2012) Abstract
Brain copy number variants and neuropsychiatric traits., Lupski, James R. , Biological psychiatry, 2012 Oct 15, Volume 72, Issue 8, p.617-9, (2012)
Complete genome sequence of Treponema pallidum strain DAL-1., Zobaníková, Marie, Mikolka Pavol, Cejková Darina, Pospíšilová Petra, Chen Lei, Strouhal Michal, Qin Xiang, Weinstock George M., and Smajs David , Standards in genomic sciences, 2012 Oct 10, Volume 7, Issue 1, p.12-21, (2012) Abstract
Identification of a single-stranded DNA virus associated with citrus chlorotic dwarf disease, a new member in the family Geminiviridae., Loconsole, Giuliana, Saldarelli Pasquale, Doddapaneni Harshavardhan, Savino Vito, Martelli Giovanni P., and Saponari Maria , Virology, 2012 Oct 10, Volume 432, Issue 1, p.162-72, (2012) Abstract
Gene structure in the sea urchin Strongylocentrotus purpuratus based on transcriptome analysis., Tu, Qiang, Cameron Andrew R., Worley Kim C., Gibbs Richard A., and Davidson Eric H. , Genome research, 2012 Oct, Volume 22, Issue 10, p.2079-87, (2012) Abstract
SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters., Estécio, Marcos R. H., Gallegos Juan, Dekmezian Mhair, Lu Yue, Liang Shoudan, and Issa Jean-Pierre J. , Molecular cancer research : MCR, 2012 Oct, Volume 10, Issue 10, p.1332-42, (2012) Abstract
Identical genomic organization of two hemichordate hox clusters., Freeman, Robert, Ikuta Tetsuro, Wu Michael, Koyanagi Ryo, Kawashima Takeshi, Tagawa Kunifumi, Humphreys Tom, Fang Guang-Chen, Fujiyama Asao, Saiga Hidetoshi, et al. , Current biology : CB, 2012 Nov 6, Volume 22, Issue 21, p.2053-8, (2012) Abstract
Atypical angiopoietin-like protein that regulates ANGPTL3., Quagliarini, Fabiana, Wang Yan, Kozlitina Julia, Grishin Nick V., Hyde Rhonda, Boerwinkle Eric, Valenzuela David M., Murphy Andrew J., Cohen Jonathan C., and Hobbs Helen H. , Proceedings of the National Academy of Sciences of the United States of America, 2012 Nov 27, Volume 109, Issue 48, p.19751-6, (2012) Abstract
Pancreatic cancer genomes reveal aberrations in axon guidance pathway genes., Biankin, Andrew V., Waddell Nicola, Kassahn Karin S., Gingras Marie-Claude, Muthuswamy Lakshmi B., Johns Amber L., Miller David K., Wilson Peter J., Patch Ann-Marie, Wu Jianmin, et al. , Nature, 2012 Nov 15, Volume 491, Issue 7424, p.399-405, (2012) Abstract
An integrated map of genetic variation from 1,092 human genomes., Abecasis, Goncalo R., Auton Adam, Brooks Lisa D., DePristo Mark A., Durbin Richard M., Handsaker Robert E., Kang Hyun Min, Marth Gabor T., and McVean Gil A. , Nature, 2012 Nov 1, Volume 491, Issue 7422, p.56-65, (2012) Abstract
The KAT6B-related disorders genitopatellar syndrome and Ohdo/SBBYS syndrome have distinct clinical features reflecting distinct molecular mechanisms., Campeau, Philippe M., Lu James T., Dawson Brian C., Fokkema Ivo F. A. C., Robertson Stephen P., Gibbs Richard A., and Lee Brendan H. , Human mutation, 2012 Nov, Volume 33, Issue 11, p.1520-5, (2012) Abstract
Mutations in the TGF-β repressor SKI cause Shprintzen-Goldberg syndrome with aortic aneurysm., Doyle, Alexander J., Doyle Jefferson J., Bessling Seneca L., Maragh Samantha, Lindsay Mark E., Schepers Dorien, Gillis Elisabeth, Mortier Geert, Homfray Tessa, Sauls Kimberly, et al. , Nature genetics, 2012 Nov, Volume 44, Issue 11, p.1249-54, (2012) Abstract
WDR35 mutation in siblings with Sensenbrenner syndrome: a ciliopathy with variable phenotype., Bacino, Carlos A., Dhar Shweta U., Brunetti-Pierri Nicola, Lee Brendan, and Bonnen Penelope E. , American journal of medical genetics. Part A, 2012 Nov, Volume 158A, Issue 11, p.2917-24, (2012) Abstract
Patterns and rates of exonic de novo mutations in autism spectrum disorders., Neale, Benjamin M., Kou Yan, Liu Li, Ma'ayan Avi, Samocha Kaitlin E., Sabo Aniko, Lin Chiao-Feng, Stevens Christine, Wang Li-San, Makarov Vladimir, et al. , Nature, 2012 May 10, Volume 485, Issue 7397, p.242-5, (2012) Abstract
The 1000 Genomes Project: data management and community access., Clarke, Laura, Zheng-Bradley Xiangqun, Smith Richard, Kulesha Eugene, Xiao Chunlin, Toneva Iliana, Vaughan Brendan, Preuss Don, Leinonen Rasko, Shumway Martin, et al. , Nature methods, 2012 May, Volume 9, Issue 5, p.459-62, (2012) Abstract
Biological characterization and next-generation genome sequencing of the unclassified Cotia virus SPAn232 (Poxviridae)., Afonso, Priscila P., Silva Patrícia M., Schnellrath Laila C., Jesus Desyreé M., Hu Jianhong, Yang Yajie, Renne Rolf, Attias Marcia, Condit Richard C., Moussatché Nissin, et al. , Journal of virology, 2012 May, Volume 86, Issue 9, p.5039-54, (2012) Abstract
Genomics: Gorilla gorilla gorilla., Gibbs, Richard A., and Rogers Jeffrey , Nature, 2012 Mar 8, Volume 483, Issue 7388, p.164-5, (2012)
Leptin mediates tumor-stromal interactions that promote the invasive growth of breast cancer cells., Barone, Ines, Catalano Stefania, Gelsomino Luca, Marsico Stefania, Giordano Cinzia, Panza Salvatore, Bonofiglio Daniela, Bossi Gianluca, Covington Kyle R., Fuqua Suzanne A. W., et al. , Cancer research, 2012 Mar 15, Volume 72, Issue 6, p.1416-27, (2012) Abstract
Strict evolutionary conservation followed rapid gene loss on human and rhesus Y chromosomes., Hughes, Jennifer F., Skaletsky Helen, Brown Laura G., Pyntikova Tatyana, Graves Tina, Fulton Robert S., Dugan Shannon, Ding Yan, Buhay Christian J., Kremitzki Colin, et al. , Nature, 2012 Mar 1, Volume 483, Issue 7387, p.82-6, (2012) Abstract
Genomic sequencing of key genes in mouse pancreatic cancer cells., Wang, Y., Zhang Y., Yang J., Ni X., Liu S., Li Z., Hodges S. E., Fisher W. E., Brunicardi F. C., Gibbs R. A., et al. , Current molecular medicine, 2012 Mar, Volume 12, Issue 3, p.331-41, (2012) Abstract
WDR62 missense mutation in a consanguineous family with primary microcephaly., Bacino, Carlos A., Arriola Luis A., Wiszniewska Joanna, and Bonnen Penelope E. , American journal of medical genetics. Part A, 2012 Mar, Volume 158A, Issue 3, p.622-5, (2012) Abstract
A framework for human microbiome research., , Nature, 2012 Jun 14, Volume 486, Issue 7402, p.215-21, (2012) Abstract
Structure, function and diversity of the healthy human microbiome., , Nature, 2012 Jun 14, Volume 486, Issue 7402, p.207-14, (2012) Abstract
Genetic contributions to the midsagittal area of the corpus callosum., Phillips, Kimberley A., Rogers Jeffrey, Barrett Elizabeth A., Glahn David C., and Kochunov Peter , Twin research and human genetics : the official journal of the International Society for Twin Studies, 2012 Jun, Volume 15, Issue 3, p.315-23, (2012) Abstract


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