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Publications

2013
A recurrent germline PAX5 mutation confers susceptibility to pre-B cell acute lymphoblastic leukemia., Shah, Sohela, Schrader Kasmintan A., Waanders Esmé, Timms Andrew E., Vijai Joseph, Miething Cornelius, Wechsler Jeremy, Yang Jun, Hayes James, Klein Robert J., et al. , Nature genetics, 2013 Oct, Volume 45, Issue 10, p.1226-31, (2013) Abstract
Persistent human herpesvirus-6 infection in patients with an inherited form of the virus., Pantry, Shara N., Medveczky Maria M., Arbuckle Jesse H., Luka Janos, Montoya Jose G., Hu Jianhong, Renne Rolf, Peterson Daniel, Pritchett Joshua C., Ablashi Dharam V., et al. , Journal of medical virology, 2013 Nov, Volume 85, Issue 11, p.1940-6, (2013) Abstract
Replicative mechanisms for CNV formation are error prone., Carvalho, Claudia M. B., Pehlivan Davut, Ramocki Melissa B., Fang Ping, Alleva Benjamin, Franco Luis M., Belmont John W., Hastings P. J., and Lupski James R. , Nature genetics, 2013 Nov, Volume 45, Issue 11, p.1319-26, (2013) Abstract
Bacterial discrimination by dictyostelid amoebae reveals the complexity of ancient interspecies interactions., Nasser, Waleed, Santhanam Balaji, Miranda Edward Roshan, Parikh Anup, Juneja Kavina, Rot Gregor, Dinh Chris, Chen Rui, Zupan Blaz, Shaulsky Gad, et al. , Current biology : CB, 2013 May 20, Volume 23, Issue 10, p.862-72, (2013) Abstract
Integrated genomic characterization of endometrial carcinoma., Kandoth, Cyriac, Schultz Nikolaus, Cherniack Andrew D., Akbani Rehan, Liu Yuexin, Shen Hui, Robertson Gordon A., Pashtan Itai, Shen Ronglai, Benz Christopher C., et al. , Nature, 2013 May 2, Volume 497, Issue 7447, p.67-73, (2013) Abstract
An integrative variant analysis pipeline for accurate genotype/haplotype inference in population NGS data., Wang, Yi, Lu James, Yu Jin, Gibbs Richard A., and Yu Fuli , Genome research, 2013 May, Volume 23, Issue 5, p.833-42, (2013) Abstract
Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A., Ling, Paul D., Reid Jeffrey G., Qin Xiang, Muzny Donna M., Gibbs Richard, Petrosino Joseph, Peng Rongsheng, Zong Jian-Chao, Heaggans Sarah Y., and Hayward Gary S. , Genome announcements, 2013 Mar-Apr, Volume 1, Issue 2, p.e0010613, (2013) Abstract
Bioactivity and Bioavailability of Ginsenosides are Dependent on the Glycosidase Activities of the A/J Mouse Intestinal Microbiome Defined by Pyrosequencing., Niu, Tao, Smith Diane L., Yang Zhen, Gao Song, Yin Taijun, Jiang Zhi-Hong, You Ming, Gibbs Richard A., Petrosino Joseph F., and Hu Ming , Pharmaceutical research, 2013 Mar, Volume 30, Issue 3, p.836-46, (2013) Abstract
Characterization of transcriptomes from sexual and asexual lineages of a New Zealand snail (Potamopyrgus antipodarum)., Wilton, Peter R., Sloan Daniel B., Logsdon John M., Doddapaneni Harshavardhan, and Neiman Maurine , Molecular ecology resources, 2013 Mar, Volume 13, Issue 2, p.289-94, (2013) Abstract
Adverse outcomes in clear cell renal cell carcinoma with mutations of 3p21 epigenetic regulators BAP1 and SETD2: a report by MSKCC and the KIRC TCGA research network., Hakimi, Ari A., Ostrovnaya Irina, Reva Boris, Schultz Nikolaus, Chen Ying-Bei, Gonen Mithat, Liu Han, Takeda Shugaku, Voss Martin H., Tickoo Satish K., et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2013 Jun 15, Volume 19, Issue 12, p.3259-67, (2013) Abstract
A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus., Doddapaneni, Harshavardhan, Subramanian Venkataramanan, Fu Bolei, and Cullen Dan , Fungal genetics and biology : FG & B, 2013 Jun, Volume 55, p.22-31, (2013) Abstract
CRHR1 genotypes, neural circuits and the diathesis for anxiety and depression., Rogers, J., Raveendran M., Fawcett G. L., Fox A. S., Shelton S. E., Oler J. A., Cheverud J., Muzny D. M., Gibbs R. A., Davidson R. J., et al. , Molecular psychiatry, 2013 Jun, Volume 18, Issue 6, p.700-7, (2013) Abstract
CRHR1 genotypes, neural circuits and the diathesis for anxiety and depression., Rogers, J., Raveendran M., Fawcett G. L., Fox A. S., Shelton S. E., Oler J. A., Cheverud J., Muzny D. M., Gibbs R. A., Davidson R. J., et al. , Molecular psychiatry, 2013 Jun, Volume 18, Issue 6, p.700-7, (2013) Abstract
Next-generation sequencing-based molecular diagnosis of a Chinese patient cohort with autosomal recessive retinitis pigmentosa., Fu, Qing, Wang Feng, Wang Hui, Xu Fei, Zaneveld Jacques E., Ren Huanan, Keser Vafa, Lopez Irma, Tuan Han-Fang, Salvo Jason S., et al. , Investigative ophthalmology & visual science, 2013 Jun, Volume 54, Issue 6, p.4158-66, (2013) Abstract
Comprehensive molecular characterization of clear cell renal cell carcinoma., Davis, Caleb F. , Nature, 2013 Jul 4, Volume 499, Issue 7456, p.43-9, (2013) Abstract
RNA interference knockdown of DNA methyl-transferase 3 affects gene alternative splicing in the honey bee., Li-Byarlay, Hongmei, Li Yang, Stroud Hume, Feng Suhua, Newman Thomas C., Kaneda Megan, Hou Kirk K., Worley Kim C., Elsik Christine G., Wickline Samuel A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2013 Jul 30, Volume 110, Issue 31, p.12750-5, (2013) Abstract
Reporting genomic sequencing results to ordering clinicians: incidental, but not exceptional., Green, Robert C., Lupski James R., and Biesecker Leslie G. , JAMA : the journal of the American Medical Association, 2013 Jul 24, Volume 310, Issue 4, p.365-6, (2013)
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species., Bradnam, Keith R., Fass Joseph N., Alexandrov Anton, Baranay Paul, Bechner Michael, Birol Inanç, Boisvert Sébastien, Chapman Jarrod A., Chapuis Guillaume, Chikhi Rayan, et al. , GigaScience, 2013 Jul 22, Volume 2, Issue 1, p.10, (2013) Abstract
Combined sequence-based and genetic mapping analysis of complex traits in outbred rats., Baud, Amelie, Hermsen Roel, Guryev Victor, Stridh Pernilla, Graham Delyth, McBride Martin W., Foroud Tatiana, Calderari Sophie, Diez Margarita, Ockinger Johan, et al. , Nature genetics, 2013 Jul, Volume 45, Issue 7, p.767-75, (2013) Abstract
From human genome to cancer genome: the first decade., Wheeler, David A., and Wang Linghua , Genome research, 2013 Jul, Volume 23, Issue 7, p.1054-62, (2013) Abstract
Integrative genomic characterization of oral squamous cell carcinoma identifies frequent somatic drivers., Pickering, Curtis R., Zhang Jiexin, Yoo Suk Young, Bengtsson Linnea, Moorthy Shhyam, Neskey David M., Zhao Mei, Ortega Alves Marcus V., Chang Kyle, Drummond Jennifer, et al. , Cancer discovery, 2013 Jul, Volume 3, Issue 7, p.770-81, (2013) Abstract
Rare complete knockouts in humans: population distribution and significant role in autism spectrum disorders., Lim, Elaine T., Raychaudhuri Soumya, Sanders Stephan J., Stevens Christine, Sabo Aniko, MacArthur Daniel G., Neale Benjamin M., Kirby Andrew, Ruderfer Douglas M., Fromer Menachem, et al. , Neuron, 2013 Jan 23, Volume 77, Issue 2, p.235-42, (2013) Abstract
Fat mass and obesity gene and cognitive decline: the Atherosclerosis Risk in Communities Study., Bressler, Jan, Fornage Myriam, Demerath Ellen W., Knopman David S., Monda Keri L., North Kari E., Penman Alan, Mosley Thomas H., and Boerwinkle Eric , Neurology, 2013 Jan 1, Volume 80, Issue 1, p.92-9, (2013) Abstract


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