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Publications

2012
Genome-wide single nucleotide polymorphism arrays as a diagnostic tool in patients with synchronous endometrial and ovarian cancer., Ikeda, Yuji, Oda Katsutoshi, Nakagawa Shunsuke, Murayama-Hosokawa Satsuki, Yamamoto Shogo, Ishikawa Shumpei, Wang Linghua, Takazawa Yutaka, Maeda Daichi, Wada-Hiraike Osamu, et al. , International journal of gynecological cancer : official journal of the International Gynecological Cancer Society, 2012 Jun, Volume 22, Issue 5, p.725-31, (2012) Abstract
High throughput sequencing methods for microbiome profiling: application to food animal systems., Highlander, Sarah K. , Animal health research reviews / Conference of Research Workers in Animal Diseases, 2012 Jun, Volume 13, Issue 1, p.40-53, (2012) Abstract
Comprehensive molecular characterization of human colon and rectal cancer., Shinbrot, Eve , Nature, 2012 Jul 19, Volume 487, Issue 7407, p.330-7, (2012) Abstract
Residual plasmatic activity of ADAMTS13 is correlated with phenotype severity in congenital thrombotic thrombocytopenic purpura., Lotta, Luca A., Wu Haifeng M., Mackie Ian J., Noris Marina, Veyradier Agnes, Scully Marie A., Remuzzi Giuseppe, Coppo Paul, Liesner Ri, Donadelli Roberta, et al. , Blood, 2012 Jul 12, Volume 120, Issue 2, p.440-8, (2012) Abstract
The Centers for Mendelian Genomics: a new large-scale initiative to identify the genes underlying rare Mendelian conditions., Bamshad, Michael J., Shendure Jay A., Valle David, Hamosh Ada, Lupski James R., Gibbs Richard A., Boerwinkle Eric, Lifton Richard P., Gerstein Mark, Gunel Murat, et al. , American journal of medical genetics. Part A, 2012 Jul, Volume 158A, Issue 7, p.1523-5, (2012) Abstract
Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence., Cejková, Darina, Zobaníková Marie, Chen Lei, Pospíšilová Petra, Strouhal Michal, Qin Xiang, Mikalová Lenka, Norris Steven J., Muzny Donna M., Gibbs Richard A., et al. , PLoS neglected tropical diseases, 2012 Jan, Volume 6, Issue 1, p.e1471, (2012) Abstract
The Drosophila melanogaster Genetic Reference Panel., Mackay, Trudy F. C., Richards Stephen, Stone Eric A., Barbadilla Antonio, Ayroles Julien F., Zhu Dianhui, Casillas Sònia, Han Yi, Magwire Michael M., Cridland Julie M., et al. , Nature, 2012 Feb 9, Volume 482, Issue 7384, p.173-8, (2012) Abstract
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants., Price, Dana C., Chan Cheong Xin, Yoon Hwan Su, Yang Eun Chan, Qiu Huan, Weber Andreas P. M., Schwacke Rainer, Gross Jeferson, Blouin Nicolas A., Lane Chris, et al. , Science (New York, N.Y.), 2012 Feb 17, Volume 335, Issue 6070, p.843-7, (2012) Abstract
A systematic survey of loss-of-function variants in human protein-coding genes., MacArthur, Daniel G., Balasubramanian Suganthi, Frankish Adam, Huang Ni, Morris James, Walter Klaudia, Jostins Luke, Habegger Lukas, Pickrell Joseph K., Montgomery Stephen B., et al. , Science (New York, N.Y.), 2012 Feb 17, Volume 335, Issue 6070, p.823-8, (2012) Abstract
Mutations in KAT6B, encoding a histone acetyltransferase, cause Genitopatellar syndrome., Campeau, Philippe M., Kim Jaeseung C., Lu James T., Schwartzentruber Jeremy A., Abdul-Rahman Omar A., Schlaubitz Silke, Murdock David M., Jiang Ming-Ming, Lammer Edward J., Enns Gregory M., et al. , American journal of human genetics, 2012 Feb 10, Volume 90, Issue 2, p.282-9, (2012) Abstract
Androgen receptor CAG repeat polymorphism in males of six non-human primate species., Mubiru, James N., Cavazos Nicole, Hemmat Peggah, Garcia-Forey Magdalena, Shade Robert E., and Rogers Jeffrey , Journal of medical primatology, 2012 Feb, Volume 41, Issue 1, p.67-70, (2012) Abstract
Whole-exome sequencing of human pancreatic cancers and characterization of genomic instability caused by MLH1 haploinsufficiency and complete deficiency., Wang, Linghua, Tsutsumi Shuichi, Kawaguchi Tokuichi, Nagasaki Koichi, Tatsuno Kenji, Yamamoto Shogo, Sang Fei, Sonoda Kohtaro, Sugawara Minoru, Saiura Akio, et al. , Genome research, 2012 Feb, Volume 22, Issue 2, p.208-19, (2012) Abstract
Deep sequencing of systematic combinatorial libraries reveals β-lactamase sequence constraints at high resolution., Deng, Zhifeng, Huang Wanzhi, Bakkalbasi Erol, Brown Nicholas G., Adamski Carolyn J., Rice Kacie, Muzny Donna, Gibbs Richard A., and Palzkill Timothy , Journal of molecular biology, 2012 Dec 7, Volume 424, Issue 3-4, p.150-67, (2012) Abstract
Identity and function of a large gene network underlying mutagenic repair of DNA breaks., Al Mamun, Abu Amar M., Lombardo Mary-Jane, Shee Chandan, Lisewski Andreas M., Gonzalez Caleb, Lin Dongxu, Nehring Ralf B., Saint-Ruf Claude, Gibson Janet L., Frisch Ryan L., et al. , Science (New York, N.Y.), 2012 Dec 7, Volume 338, Issue 6112, p.1344-8, (2012) Abstract
Identification of TP53 as an acute lymphocytic leukemia susceptibility gene through exome sequencing., Powell, Bradford C., Jiang Lichun, Muzny Donna M., Treviño Lisa R., Dreyer Zoann E., Strong Louise C., Wheeler David A., Gibbs Richard A., and Plon Sharon E. , Pediatric blood & cancer, 2012 Dec 19, (2012) Abstract
Exome capture reveals ZNF423 and CEP164 mutations, linking renal ciliopathies to DNA damage response signaling., Chaki, Moumita, Airik Rannar, Ghosh Amiya K., Giles Rachel H., Chen Rui, Slaats Gisela G., Wang Hui, Hurd Toby W., Zhou Weibin, Cluckey Andrew, et al. , Cell, 2012 Aug 3, Volume 150, Issue 3, p.533-48, (2012) Abstract
Landscape of somatic retrotransposition in human cancers., Lee, Eunjung, Iskow Rebecca, Yang Lixing, Gokcumen Omer, Haseley Psalm, Luquette Lovelace J., Lohr Jens G., Harris Christopher C., Ding Li, Wilson Richard K., et al. , Science (New York, N.Y.), 2012 Aug 24, Volume 337, Issue 6097, p.967-71, (2012) Abstract
Loss-of-function mutations in TGFB2 cause a syndromic presentation of thoracic aortic aneurysm., Lindsay, Mark E., Schepers Dorien, Bolar Nikhita Ajit, Doyle Jefferson J., Gallo Elena, Fert-Bober Justyna, Kempers Marlies J. E., Fishman Elliot K., Chen Yichun, Myers Loretha, et al. , Nature genetics, 2012 Aug, Volume 44, Issue 8, p.922-7, (2012) Abstract
Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster., Hong, X., Doddapaneni H., Comeron J. M., Rodesch M. J., Halvensleben H. A., Nien C. Y., Bolei F., Metpally R., Richmond T. A., Albert T. J., et al. , G3 (Bethesda, Md.), 2012 Aug, Volume 2, Issue 8, p.873-82, (2012) Abstract
Population-based risk factors for elevated alanine aminotransferase in a South Texas Mexican-American population., Qu, Hui-Qi, Li Quan, Grove Megan L., Lu Yang, Pan Jen-Jung, Rentfro Anne R., Bickel Perry E., Fallon Michael B., Hanis Craig L., Boerwinkle Eric, et al. , Archives of medical research, 2012 Aug, Volume 43, Issue 6, p.482-8, (2012) Abstract
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis., Fernandez-Fueyo, Elena, Ruiz-Dueñas Francisco J., Ferreira Patricia, Floudas Dimitrios, Hibbett David S., Canessa Paulo, Larrondo Luis F., James Tim Y., Seelenfreund Daniela, Lobos Sergio, et al. , Proceedings of the National Academy of Sciences of the United States of America, 2012 Apr 3, Volume 109, Issue 14, p.5458-63, (2012) Abstract
Serum prostate specific antigen changes in cynomolgus monkeys (Macaca fascicularis) on a high sugar high fat diet., Mubiru, James N., Garcia-Forey Magdalena, Cavazos Nicole, Hemmat Peggah, Dick Edward J., Owston Michael A., Bauer Cassondra A., Shade Robert E., and Rogers Jeffrey , The Prostate, 2012 Apr, Volume 72, Issue 5, p.469-75, (2012) Abstract
Ago HITS-CLIP expands understanding of Kaposi's sarcoma-associated herpesvirus miRNA function in primary effusion lymphomas., Haecker, Irina, Gay Lauren A., Yang Yajie, Hu Jianhong, Morse Alison M., McIntyre Lauren M., and Renne Rolf , PLoS pathogens, 2012, Volume 8, Issue 8, p.e1002884, (2012) Abstract
Analysis of microsatellite variation in Drosophila melanogaster with population-scale genome sequencing., Fondon, John W., Martin Andy, Richards Stephen, Gibbs Richard A., and Mittelman David , PloS one, 2012, Volume 7, Issue 3, p.e33036, (2012) Abstract


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