Skip to Content

Publications

2012
Integrated analyses of microRNAs demonstrate their widespread influence on gene expression in high-grade serous ovarian carcinoma., Creighton, Chad J., Hernandez-Herrera Anadulce, Jacobsen Anders, Levine Douglas A., Mankoo Parminder, Schultz Nikolaus, Du Ying, Zhang Yiqun, Larsson Erik, Sheridan Robert, et al. , PloS one, 2012, Volume 7, Issue 3, p.e34546, (2012) Abstract
An integrative variant analysis suite for whole exome next-generation sequencing data., Challis, Danny, Yu Jin, Evani Uday S., Jackson Andrew R., Paithankar Sameer, Coarfa Cristian, Milosavljevic Aleksandar, Gibbs Richard A., and Yu Fuli , BMC bioinformatics, 2012, Volume 13, p.8, (2012) Abstract
MAPK target sites of eyes absent are not required for eye development or survival in Drosophila., Jusiak, Barbara, Abulimiti Abuduaini, Haelterman Nele, Chen Rui, and Mardon Graeme , PloS one, 2012, Volume 7, Issue 12, p.e50776, (2012) Abstract
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology., English, Adam C., Richards Stephen, Han Yi, Wang Min, Vee Vanesa, Qu Jiaxin, Qin Xiang, Muzny Donna M., Reid Jeffrey G., Worley Kim C., et al. , PloS one, 2012, Volume 7, Issue 11, p.e47768, (2012) Abstract
Mis-assembled "segmental duplications" in two versions of the Bos taurus genome., Zimin, Aleksey V., Kelley David R., Roberts Michael, Marçais Guillaume, Salzberg Steven L., and Yorke James A. , PloS one, 2012, Volume 7, Issue 8, p.e42680, (2012) Abstract
PDX-1 is a therapeutic target for pancreatic cancer, insulinoma and islet neoplasia using a novel RNA interference platform., Liu, Shi-He, Rao Donald D., Nemunaitis John, Senzer Neil, Zhou Guisheng, Dawson David, Gingras Marie-Claude, Wang Zhaohui, Gibbs Richard, Norman Michael, et al. , PloS one, 2012, Volume 7, Issue 8, p.e40452, (2012) Abstract
Phosphorylated and sumoylation-deficient progesterone receptors drive proliferative gene signatures during breast cancer progression., Knutson, Todd P., Daniel Andrea R., Fan Danhua, Silverstein Kevin At, Covington Kyle R., Fuqua Suzanne A. W., and Lange Carol A. , Breast cancer research : BCR, 2012, Volume 14, Issue 3, p.R95, (2012) Abstract
PNPLA3 polymorphisms and liver aminotransferase levels in a Mexican American population., Li, Quan, Qu Hui-Qi, Rentfro Anne R., Grove Megan L., Mirza Shaper, Lu Yang, Hanis Craig L., Fallon Michael B., Boerwinkle Eric, Fisher-Hoch Susan P., et al. , Clinical and investigative medicine. Médecine clinique et experimentale, 2012, Volume 35, Issue 4, p.E237-45, (2012) Abstract
REGγ is associated with multiple oncogenic pathways in human cancers., He, Jing, Cui Long, Zeng Yu, Wang Guangqiang, Zhou Ping, Yang Yuanyuan, Ji Lei, Zhao Yanyan, Chen Jiwu, Wang Zhuo, et al. , BMC cancer, 2012, Volume 12, p.75, (2012) Abstract
Transcriptional enhancers in protein-coding exons of vertebrate developmental genes., Ritter, Deborah I., Dong Zhiqiang, Guo Su, and Chuang Jeffrey H. , PloS one, 2012, Volume 7, Issue 5, p.e35202, (2012) Abstract
Treponema pallidum infection in the wild baboons of East Africa: distribution and genetic characterization of the strains responsible., Harper, Kristin N., Fyumagwa Robert D., Hoare Richard, Wambura Philemon N., Coppenhaver Dorian H., Sapolsky Robert M., Alberts Susan C., Tung Jenny, Rogers Jeffrey, Kilewo Morris, et al. , PloS one, 2012, Volume 7, Issue 12, p.e50882, (2012) Abstract
TWIST represses estrogen receptor-alpha expression by recruiting the NuRD protein complex in breast cancer cells., Fu, Junjiang, Zhang Lianmei, He Tao, Xiao Xiuli, Liu Xiaoyan, Wang Li, Yang Luquan, Yang Manman, Zhang Tiandan, Chen Rui, et al. , International journal of biological sciences, 2012, Volume 8, Issue 4, p.522-32, (2012) Abstract
Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster., Ober, Ulrike, Ayroles Julien F., Stone Eric A., Richards Stephen, Zhu Dianhui, Gibbs Richard A., Stricker Christian, Gianola Daniel, Schlather Martin, Mackay Trudy F. C., et al. , PLoS genetics, 2012, Volume 8, Issue 5, p.e1002685, (2012) Abstract
Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains., Pětrošová, Helena, Zobaníková Marie, Čejková Darina, Mikalová Lenka, Pospíšilová Petra, Strouhal Michal, Chen Lei, Qin Xiang, Muzny Donna M., Weinstock George M., et al. , PLoS neglected tropical diseases, 2012, Volume 6, Issue 9, p.e1832, (2012) Abstract
Estrogen Receptor-Positive Breast Cancer Cells Drive CAFs to Secrete Leptin and Support Tumor Invasiveness, Barone, Ines, Catalano Stefania, Gelsomino Luca, Panza Salvatore, Marsico Stefania, Giordano Cinzia, Bonofiglio Daniela, Casaburi Ivan, Covington Kyle R., Fuqua Suzanne, et al. , The FASEB Journal, Volume 26, p.142–7, (2012)
Increasing the number of URMS in genomic science; (1854F)., Murray, D., Whittington D., and Gibbs R. , 62nd Annual Meeting of The American Society of Human Genetics, San Francisco, California, (2012)
Targeting Thyroid Receptor b in Estrogen Receptor Negative Breast Cancer, Gu, G., Covington K., Rechoum Y., O'Malley B., Mangelsdorf D., Minna J., Webb P., and Fuqua S. , Cancer Research, Volume 72, Number 24 Supplement 3, (2012)
Whole Exome Sequencing of Polycythemia Vera Reveals Novel Recurrent Somatic and Germline Variation, Wang, Linghua, Swierczek Sabina, Piterkova Lucie, Hickman Kimberly, Wheeler David A., and Prchal Josef T. , Blood, Volume 120, Number 21, (2012)
2011
Genetic basis for in vivo daptomycin resistance in enterococci., Arias, Cesar A., Panesso Diana, McGrath Danielle M., Qin Xiang, Mojica Maria F., Miller Corwin, Diaz Lorena, Tran Truc T., Rincon Sandra, Barbu Magda E., et al. , The New England journal of medicine, 2011 Sep 8, Volume 365, Issue 10, p.892-900, (2011) Abstract
Clan genomics and the complex architecture of human disease., Lupski, James R., Belmont John W., Boerwinkle Eric, and Gibbs Richard A. , Cell, 2011 Sep 30, Volume 147, Issue 1, p.32-43, (2011) Abstract
Resequencing of IRS2 reveals rare variants for obesity but not fasting glucose homeostasis in Hispanic children., Butte, Nancy F., Voruganti Saroja V., Cole Shelley A., Haack Karin, Comuzzie Anthony G., Muzny Donna M., Wheeler David A., Chang Kyle, Hawes Alicia, and Gibbs Richard A. , Physiological genomics, 2011 Sep 22, Volume 43, Issue 18, p.1029-37, (2011) Abstract
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment., Sczesnak, Andrew, Segata Nicola, Qin Xiang, Gevers Dirk, Petrosino Joseph F., Huttenhower Curtis, Littman Dan R., and Ivanov Ivaylo I. , Cell host & microbe, 2011 Sep 15, Volume 10, Issue 3, p.260-72, (2011) Abstract
Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders., Schaaf, Christian P., Sabo Aniko, Sakai Yasunari, Crosby Jacy, Muzny Donna, Hawes Alicia, Lewis Lora, Akbar Humeira, Varghese Robin, Boerwinkle Eric, et al. , Human molecular genetics, 2011 Sep 1, Volume 20, Issue 17, p.3366-75, (2011) Abstract
Systems biology data analysis methodology in pharmacogenomics., Rodin, Andrei S., Gogoshin Grigoriy, and Boerwinkle Eric , Pharmacogenomics, 2011 Sep, Volume 12, Issue 9, p.1349-60, (2011) Abstract


about seo