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Publications

2012
PNPLA3 polymorphisms and liver aminotransferase levels in a Mexican American population., Li, Quan, Qu Hui-Qi, Rentfro Anne R., Grove Megan L., Mirza Shaper, Lu Yang, Hanis Craig L., Fallon Michael B., Boerwinkle Eric, Fisher-Hoch Susan P., et al. , Clinical and investigative medicine. Médecine clinique et experimentale, 2012, Volume 35, Issue 4, p.E237-45, (2012) Abstract
REGγ is associated with multiple oncogenic pathways in human cancers., He, Jing, Cui Long, Zeng Yu, Wang Guangqiang, Zhou Ping, Yang Yuanyuan, Ji Lei, Zhao Yanyan, Chen Jiwu, Wang Zhuo, et al. , BMC cancer, 2012, Volume 12, p.75, (2012) Abstract
Transcriptional enhancers in protein-coding exons of vertebrate developmental genes., Ritter, Deborah I., Dong Zhiqiang, Guo Su, and Chuang Jeffrey H. , PloS one, 2012, Volume 7, Issue 5, p.e35202, (2012) Abstract
Treponema pallidum infection in the wild baboons of East Africa: distribution and genetic characterization of the strains responsible., Harper, Kristin N., Fyumagwa Robert D., Hoare Richard, Wambura Philemon N., Coppenhaver Dorian H., Sapolsky Robert M., Alberts Susan C., Tung Jenny, Rogers Jeffrey, Kilewo Morris, et al. , PloS one, 2012, Volume 7, Issue 12, p.e50882, (2012) Abstract
TWIST represses estrogen receptor-alpha expression by recruiting the NuRD protein complex in breast cancer cells., Fu, Junjiang, Zhang Lianmei, He Tao, Xiao Xiuli, Liu Xiaoyan, Wang Li, Yang Luquan, Yang Manman, Zhang Tiandan, Chen Rui, et al. , International journal of biological sciences, 2012, Volume 8, Issue 4, p.522-32, (2012) Abstract
Using whole-genome sequence data to predict quantitative trait phenotypes in Drosophila melanogaster., Ober, Ulrike, Ayroles Julien F., Stone Eric A., Richards Stephen, Zhu Dianhui, Gibbs Richard A., Stricker Christian, Gianola Daniel, Schlather Martin, Mackay Trudy F. C., et al. , PLoS genetics, 2012, Volume 8, Issue 5, p.e1002685, (2012) Abstract
Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains., Pětrošová, Helena, Zobaníková Marie, Čejková Darina, Mikalová Lenka, Pospíšilová Petra, Strouhal Michal, Chen Lei, Qin Xiang, Muzny Donna M., Weinstock George M., et al. , PLoS neglected tropical diseases, 2012, Volume 6, Issue 9, p.e1832, (2012) Abstract
Estrogen Receptor-Positive Breast Cancer Cells Drive CAFs to Secrete Leptin and Support Tumor Invasiveness, Barone, Ines, Catalano Stefania, Gelsomino Luca, Panza Salvatore, Marsico Stefania, Giordano Cinzia, Bonofiglio Daniela, Casaburi Ivan, Covington Kyle R., Fuqua Suzanne, et al. , The FASEB Journal, Volume 26, p.142–7, (2012)
Increasing the number of URMS in genomic science; (1854F)., Murray, D., Whittington D., and Gibbs R. , 62nd Annual Meeting of The American Society of Human Genetics, San Francisco, California, (2012)
Targeting Thyroid Receptor b in Estrogen Receptor Negative Breast Cancer, Gu, G., Covington K., Rechoum Y., O'Malley B., Mangelsdorf D., Minna J., Webb P., and Fuqua S. , Cancer Research, Volume 72, Number 24 Supplement 3, (2012)
Whole Exome Sequencing of Polycythemia Vera Reveals Novel Recurrent Somatic and Germline Variation, Wang, Linghua, Swierczek Sabina, Piterkova Lucie, Hickman Kimberly, Wheeler David A., and Prchal Josef T. , Blood, Volume 120, Number 21, (2012)
2011
Genetic basis for in vivo daptomycin resistance in enterococci., Arias, Cesar A., Panesso Diana, McGrath Danielle M., Qin Xiang, Mojica Maria F., Miller Corwin, Diaz Lorena, Tran Truc T., Rincon Sandra, Barbu Magda E., et al. , The New England journal of medicine, 2011 Sep 8, Volume 365, Issue 10, p.892-900, (2011) Abstract
Clan genomics and the complex architecture of human disease., Lupski, James R., Belmont John W., Boerwinkle Eric, and Gibbs Richard A. , Cell, 2011 Sep 30, Volume 147, Issue 1, p.32-43, (2011) Abstract
Resequencing of IRS2 reveals rare variants for obesity but not fasting glucose homeostasis in Hispanic children., Butte, Nancy F., Voruganti Saroja V., Cole Shelley A., Haack Karin, Comuzzie Anthony G., Muzny Donna M., Wheeler David A., Chang Kyle, Hawes Alicia, and Gibbs Richard A. , Physiological genomics, 2011 Sep 22, Volume 43, Issue 18, p.1029-37, (2011) Abstract
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment., Sczesnak, Andrew, Segata Nicola, Qin Xiang, Gevers Dirk, Petrosino Joseph F., Huttenhower Curtis, Littman Dan R., and Ivanov Ivaylo I. , Cell host & microbe, 2011 Sep 15, Volume 10, Issue 3, p.260-72, (2011) Abstract
Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders., Schaaf, Christian P., Sabo Aniko, Sakai Yasunari, Crosby Jacy, Muzny Donna, Hawes Alicia, Lewis Lora, Akbar Humeira, Varghese Robin, Boerwinkle Eric, et al. , Human molecular genetics, 2011 Sep 1, Volume 20, Issue 17, p.3366-75, (2011) Abstract
Systems biology data analysis methodology in pharmacogenomics., Rodin, Andrei S., Gogoshin Grigoriy, and Boerwinkle Eric , Pharmacogenomics, 2011 Sep, Volume 12, Issue 9, p.1349-60, (2011) Abstract
Whole-exome sequencing identifies compound heterozygous mutations in WDR62 in siblings with recurrent polymicrogyria., Murdock, David R., Clark Gary D., Bainbridge Matthew N., Newsham Irene, Wu Yuan-Qing, Muzny Donna M., Cheung Sau Wai, Gibbs Richard A., and Ramocki Melissa B. , American journal of medical genetics. Part A, 2011 Sep, Volume 155A, Issue 9, p.2071-7, (2011) Abstract
A high-resolution map of human evolutionary constraint using 29 mammals., Lindblad-Toh, Kerstin, Garber Manuel, Zuk Or, Lin Michael F., Parker Brian J., Washietl Stefan, Kheradpour Pouya, Ernst Jason, Jordan Gregory, Mauceli Evan, et al. , Nature, 2011 Oct 27, Volume 478, Issue 7370, p.476-82, (2011) Abstract
Dicer-mediated upregulation of BCRP confers tamoxifen resistance in human breast cancer cells., Selever, Jennifer, Gu Guowei, Lewis Michael T., Beyer Amanda, Herynk Matthew H., Covington Kyle R., Tsimelzon Anna, Dontu Gabriela, Provost Patrick, Di Pietro Attilio, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2011 Oct 15, Volume 17, Issue 20, p.6510-21, (2011) Abstract
Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways., Palmieri, Michela, Impey Soren, Kang Hyojin, di Ronza Alberto, Pelz Carl, Sardiello Marco, and Ballabio Andrea , Human molecular genetics, 2011 Oct 1, Volume 20, Issue 19, p.3852-66, (2011) Abstract
A preliminary report on the feeding of cynomolgus monkeys (Macaca fascicularis) with a high-sugar high-fat diet for 33 weeks., Mubiru, James N., Garcia-Forey Magdalena, Higgins Paul B., Hemmat Peggah, Cavazos Nicole E., Dick Edward J., Owston Michael A., Bauer Cassondra A., Shade Robert E., Comuzzie Anthony G., et al. , Journal of medical primatology, 2011 Oct, Volume 40, Issue 5, p.335-41, (2011) Abstract
Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion., Xi, Ruibin, Hadjipanayis Angela G., Luquette Lovelace J., Kim Tae-Min, Lee Eunjung, Zhang Jianhua, Johnson Mark D., Muzny Donna M., Wheeler David A., Gibbs Richard A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2011 Nov 15, Volume 108, Issue 46, p.E1128-36, (2011) Abstract
Disruptive TP53 mutation is associated with aggressive disease characteristics in an orthotopic murine model of oral tongue cancer., Sano, Daisuke, Xie Tong-Xin, Ow Thomas J., Zhao Mei, Pickering Curtis R., Zhou Ge, Sandulache Vlad C., Wheeler David A., Gibbs Richard A., Caulin Carlos, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2011 Nov 1, Volume 17, Issue 21, p.6658-70, (2011) Abstract


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