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Publications

2011
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment., Sczesnak, Andrew, Segata Nicola, Qin Xiang, Gevers Dirk, Petrosino Joseph F., Huttenhower Curtis, Littman Dan R., and Ivanov Ivaylo I. , Cell host & microbe, 2011 Sep 15, Volume 10, Issue 3, p.260-72, (2011) Abstract
Oligogenic heterozygosity in individuals with high-functioning autism spectrum disorders., Schaaf, Christian P., Sabo Aniko, Sakai Yasunari, Crosby Jacy, Muzny Donna, Hawes Alicia, Lewis Lora, Akbar Humeira, Varghese Robin, Boerwinkle Eric, et al. , Human molecular genetics, 2011 Sep 1, Volume 20, Issue 17, p.3366-75, (2011) Abstract
Systems biology data analysis methodology in pharmacogenomics., Rodin, Andrei S., Gogoshin Grigoriy, and Boerwinkle Eric , Pharmacogenomics, 2011 Sep, Volume 12, Issue 9, p.1349-60, (2011) Abstract
Whole-exome sequencing identifies compound heterozygous mutations in WDR62 in siblings with recurrent polymicrogyria., Murdock, David R., Clark Gary D., Bainbridge Matthew N., Newsham Irene, Wu Yuan-Qing, Muzny Donna M., Cheung Sau Wai, Gibbs Richard A., and Ramocki Melissa B. , American journal of medical genetics. Part A, 2011 Sep, Volume 155A, Issue 9, p.2071-7, (2011) Abstract
A high-resolution map of human evolutionary constraint using 29 mammals., Lindblad-Toh, Kerstin, Garber Manuel, Zuk Or, Lin Michael F., Parker Brian J., Washietl Stefan, Kheradpour Pouya, Ernst Jason, Jordan Gregory, Mauceli Evan, et al. , Nature, 2011 Oct 27, Volume 478, Issue 7370, p.476-82, (2011) Abstract
Dicer-mediated upregulation of BCRP confers tamoxifen resistance in human breast cancer cells., Selever, Jennifer, Gu Guowei, Lewis Michael T., Beyer Amanda, Herynk Matthew H., Covington Kyle R., Tsimelzon Anna, Dontu Gabriela, Provost Patrick, Di Pietro Attilio, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2011 Oct 15, Volume 17, Issue 20, p.6510-21, (2011) Abstract
Characterization of the CLEAR network reveals an integrated control of cellular clearance pathways., Palmieri, Michela, Impey Soren, Kang Hyojin, di Ronza Alberto, Pelz Carl, Sardiello Marco, and Ballabio Andrea , Human molecular genetics, 2011 Oct 1, Volume 20, Issue 19, p.3852-66, (2011) Abstract
A preliminary report on the feeding of cynomolgus monkeys (Macaca fascicularis) with a high-sugar high-fat diet for 33 weeks., Mubiru, James N., Garcia-Forey Magdalena, Higgins Paul B., Hemmat Peggah, Cavazos Nicole E., Dick Edward J., Owston Michael A., Bauer Cassondra A., Shade Robert E., Comuzzie Anthony G., et al. , Journal of medical primatology, 2011 Oct, Volume 40, Issue 5, p.335-41, (2011) Abstract
Copy number variation detection in whole-genome sequencing data using the Bayesian information criterion., Xi, Ruibin, Hadjipanayis Angela G., Luquette Lovelace J., Kim Tae-Min, Lee Eunjung, Zhang Jianhua, Johnson Mark D., Muzny Donna M., Wheeler David A., Gibbs Richard A., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2011 Nov 15, Volume 108, Issue 46, p.E1128-36, (2011) Abstract
Disruptive TP53 mutation is associated with aggressive disease characteristics in an orthotopic murine model of oral tongue cancer., Sano, Daisuke, Xie Tong-Xin, Ow Thomas J., Zhao Mei, Pickering Curtis R., Zhou Ge, Sandulache Vlad C., Wheeler David A., Gibbs Richard A., Caulin Carlos, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2011 Nov 1, Volume 17, Issue 21, p.6658-70, (2011) Abstract
Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome., Saulnier, Delphine M., Riehle Kevin, Mistretta Toni-Ann, Diaz Maria-Alejandra, Mandal Debasmita, Raza Sabeen, Weidler Erica M., Qin Xiang, Coarfa Cristian, Milosavljevic Aleksandar, et al. , Gastroenterology, 2011 Nov, Volume 141, Issue 5, p.1782-91, (2011) Abstract
Interaction of folate intake and the paraoxonase Q192R polymorphism with risk of incident coronary heart disease and ischemic stroke: the atherosclerosis risk in communities study., Luu, Hung N., Kingah Pascal L., North Kari, Boerwinkle Eric, and Volcik Kelly A. , Annals of epidemiology, 2011 Nov, Volume 21, Issue 11, p.815-23, (2011) Abstract
High-resolution characterization of a hepatocellular carcinoma genome., Totoki, Yasushi, Tatsuno Kenji, Yamamoto Shogo, Arai Yasuhito, Hosoda Fumie, Ishikawa Shumpei, Tsutsumi Shuichi, Sonoda Kohtaro, Totsuka Hirohiko, Shirakihara Takuya, et al. , Nature genetics, 2011 May, Volume 43, Issue 5, p.464-9, (2011) Abstract
Immunoglobulin locus associates with serum IgG levels and albuminuria., Herring, Stacy M., Gokul Nisha, Monita Monique, Bell Rebecca, Boerwinkle Eric, Wenderfer Scott E., Braun Michael C., and Doris Peter A. , Journal of the American Society of Nephrology : JASN, 2011 May, Volume 22, Issue 5, p.881-9, (2011) Abstract
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications., Yilmaz, Pelin, Kottmann Renzo, Field Dawn, Knight Rob, Cole James R., Amaral-Zettler Linda, Gilbert Jack A., Karsch-Mizrachi Ilene, Johnston Anjanette, Cochrane Guy, et al. , Nature biotechnology, 2011 May, Volume 29, Issue 5, p.415-20, (2011) Abstract
Activation of multiple proto-oncogenic tyrosine kinases in breast cancer via loss of the PTPN12 phosphatase., Sun, Tingting, Aceto Nicola, Meerbrey Kristen L., Kessler Jessica D., Zhou Chunshui, Migliaccio Ilenia, Nguyen Don X., Pavlova Natalya N., Botero Maria, Huang Jian, et al. , Cell, 2011 Mar 4, Volume 144, Issue 5, p.703-18, (2011) Abstract
Kinda baboons (Papio kindae) and grayfoot chacma baboons (P. ursinus griseipes) hybridize in the Kafue river valley, Zambia., Jolly, C. J., Burrell A. S., Phillips-Conroy J. E., Bergey C., and Rogers J. , American journal of primatology, 2011 Mar, Volume 73, Issue 3, p.291-303, (2011) Abstract
TTC21B contributes both causal and modifying alleles across the ciliopathy spectrum., Davis, Erica E., Zhang Qi, Liu Qin, Diplas Bill H., Davey Lisa M., Hartley Jane, Stoetzel Corinne, Szymanska Katarzyna, Ramaswami Gokul, Logan Clare V., et al. , Nature genetics, 2011 Mar, Volume 43, Issue 3, p.189-96, (2011) Abstract
Integrated genomic analyses of ovarian carcinoma., , Nature, 2011 Jun 30, Volume 474, Issue 7353, p.609-15, (2011) Abstract
Exome sequencing of ion channel genes reveals complex profiles confounding personal risk assessment in epilepsy., Klassen, Tara, Davis Caleb F., Goldman Alica, Burgess Dan, Chen Tim, Wheeler David, McPherson John, Bourquin Traci, Lewis Lora, Villasana Donna, et al. , Cell, 2011 Jun 24, Volume 145, Issue 7, p.1036-48, (2011) Abstract
Whole-genome sequencing for optimized patient management., Bainbridge, Matthew N., Wiszniewski Wojciech, Murdock David R., Friedman Jennifer, Gonzaga-Jauregui Claudia, Newsham Irene, Reid Jeffrey G., Fink John K., Morgan Margaret B., Gingras Marie-Claude, et al. , Science translational medicine, 2011 Jun 15, Volume 3, Issue 87, p.87re3, (2011) Abstract
Genome-wide association studies of cerebral white matter lesion burden: the CHARGE consortium., Fornage, Myriam, Debette Stephanie, Bis Joshua C., Schmidt Helena, Ikram Arfan M., Dufouil Carole, Sigurdsson Sigurdur, Lumley Thomas, DeStefano Anita L., Fazekas Franz, et al. , Annals of neurology, 2011 Jun, Volume 69, Issue 6, p.928-39, (2011) Abstract
High-resolution identity by descent mapping uncovers the genetic basis for blood pressure differences between spontaneously hypertensive rat lines., Bell, Rebecca, Herring Stacy M., Gokul Nisha, Monita Monique, Grove Megan L., Boerwinkle Eric, and Doris Peter A. , Circulation. Cardiovascular genetics, 2011 Jun, Volume 4, Issue 3, p.223-31, (2011) Abstract
Recurrent chromosome 16p13.1 duplications are a risk factor for aortic dissections., Kuang, Shao-Qing, Guo Dong-Chuan, Prakash Siddharth K., McDonald Merry-Lynn N., Johnson Ralph J., Wang Min, Regalado Ellen S., Russell Ludivine, Cao Jiu-Mei, Kwartler Callie, et al. , PLoS genetics, 2011 Jun, Volume 7, Issue 6, p.e1002118, (2011) Abstract
Demographic history and rare allele sharing among human populations., Gravel, Simon, Henn Brenna M., Gutenkunst Ryan N., Indap Amit R., Marth Gabor T., Clark Andrew G., Yu Fuli, Gibbs Richard A., and Bustamante Carlos D. , Proceedings of the National Academy of Sciences of the United States of America, 2011 Jul 19, Volume 108, Issue 29, p.11983-8, (2011) Abstract


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