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Publications

2011
ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads., Miller, Christopher A., Hampton Oliver, Coarfa Cristian, and Milosavljevic Aleksandar , PloS one, 2011, Volume 6, Issue 1, p.e16327, (2011) Abstract
Targeted enrichment beyond the consensus coding DNA sequence exome reveals exons with higher variant densities., Bainbridge, Matthew N., Wang Min, Wu Yuanqing, Newsham Irene, Muzny Donna M., Jefferies John L., Albert Thomas J., Burgess Daniel L., and Gibbs Richard A. , Genome biology, 2011, Volume 12, Issue 7, p.R68, (2011) Abstract
Transcriptomic analysis supports similar functional roles for the two thymuses of the tammar wallaby., Wong, Emily S. W., Papenfuss Anthony T., Heger Andreas, Hsu Arthur L., Ponting Chris P., Miller Robert D., Fenelon Jane C., Renfree Marilyn B., Gibbs Richard A., and Belov Katherine , BMC genomics, 2011, Volume 12, p.420, (2011) Abstract
New Found Association Between Mutated Tumor Suppressive Gene And Non-Hepatitis C Hepatocellular Carcinoma, Nguyen, NT, Harring TR, Drummond J., Chang K., Gingras M., Wheeler D. A., O'Mahoney CA, and Goss JA , Journal of Surgical Research, Volume 165, Number 2, p.177, (2011)
The Red-R Framework for Integrated Discovery, Covington, Kyle R., and Parikh Anup , The Red-R Journal, Number 1-08/08/2011, (2011)
“Why do Research Technicians Seek Employment at BCM?”, Murray, D. D. , BCM Education Research Showcase. Education Scholars Fellowship Program Poster Session., (2011)
2010
Genome-to-function characterization of novel fungal P450 monooxygenases oxidizing polycyclic aromatic hydrocarbons (PAHs)., Syed, Khajamohiddin, Doddapaneni Harshavardhan, Subramanian Venkataramanan, Lam Ying Wai, and Yadav Jagjit S. , Biochemical and biophysical research communications, 2010 Sep 3, Volume 399, Issue 4, p.492-7, (2010) Abstract
Integrating common and rare genetic variation in diverse human populations., Altshuler, David M., Gibbs Richard A., Peltonen Leena, Altshuler David M., Gibbs Richard A., Peltonen Leena, Dermitzakis Emmanouil, Schaffner Stephen F., Yu Fuli, Peltonen Leena, et al. , Nature, 2010 Sep 2, Volume 467, Issue 7311, p.52-8, (2010) Abstract
Associations between dietary patterns and flow cytometry-measured biomarkers of inflammation and cellular activation in the Atherosclerosis Risk in Communities (ARIC) Carotid Artery MRI Study., Nettleton, Jennifer A., Matijevic Nena, Follis Jack L., Folsom Aaron R., and Boerwinkle Eric , Atherosclerosis, 2010 Sep, Volume 212, Issue 1, p.260-7, (2010) Abstract
Genetic and environmental contributions to variation in baboon cranial morphology., Roseman, Charles C., Willmore Katherine E., Rogers Jeffrey, Hildebolt Charles, Sadler Brooke E., Richtsmeier Joan T., and Cheverud James M. , American journal of physical anthropology, 2010 Sep, Volume 143, Issue 1, p.1-12, (2010) Abstract
Hsp90 modulates CAG repeat instability in human cells., Mittelman, David, Sykoudis Kristen, Hersh Megan, Lin Yunfu, and Wilson John H. , Cell stress & chaperones, 2010 Sep, Volume 15, Issue 5, p.753-9, (2010) Abstract
Mutational analysis of the latency-associated nuclear antigen DNA-binding domain of Kaposi's sarcoma-associated herpesvirus reveals structural conservation among gammaherpesvirus origin-binding proteins., Han, Soo-Jin, Hu Jianhong, Pierce Brian, Weng Zhiping, and Renne Rolf , The Journal of general virology, 2010 Sep, Volume 91, Issue Pt 9, p.2203-15, (2010) Abstract
Stress, genomes, and evolution., Mittelman, David, and Wilson John H. , Cell stress & chaperones, 2010 Sep, Volume 15, Issue 5, p.463-6, (2010) Abstract
A map of human genome variation from population-scale sequencing., Abecasis, Gonçalo R., Altshuler David, Auton Adam, Brooks Lisa D., Durbin Richard M., Gibbs Richard A., Hurles Matt E., and McVean Gil A. , Nature, 2010 Oct 28, Volume 467, Issue 7319, p.1061-73, (2010) Abstract
Genetic, epigenetic, and gene-by-diet interaction effects underlie variation in serum lipids in a LG/JxSM/J murine model., Lawson, Heather A., Zelle Kathleen M., Fawcett Gloria L., Wang Bing, Pletscher Susan L., Maxwell Taylor J., Ehrich Thomas H., Kenney-Hunt Jane P., Wolf Jason B., Semenkovich Clay F., et al. , Journal of lipid research, 2010 Oct, Volume 51, Issue 10, p.2976-84, (2010) Abstract
The importance of being cis: evolution of orthologous fish and mammalian enhancer activity., Ritter, Deborah I., Li Qiang, Kostka Dennis, Pollard Katherine S., Guo Su, and Chuang Jeffrey H. , Molecular biology and evolution, 2010 Oct, Volume 27, Issue 10, p.2322-32, (2010) Abstract
P450 redox enzymes in the white rot fungus Phanerochaete chrysosporium: gene transcription, heterologous expression, and activity analysis on the purified proteins., Subramanian, Venkataramanan, Doddapaneni Harshavardhan, Syed Khajamohiddin, and Yadav Jagjit S. , Current microbiology, 2010 Oct, Volume 61, Issue 4, p.306-14, (2010) Abstract
Genetics of primary cerebral gyrification: Heritability of length, depth and area of primary sulci in an extended pedigree of Papio baboons., Kochunov, P., Glahn D. C., Fox P. T., Lancaster J. L., Saleem K., Shelledy W., Zilles K., Thompson P. M., Coulon O., Mangin J. F., et al. , NeuroImage, 2010 Nov 15, Volume 53, Issue 3, p.1126-34, (2010) Abstract
On the genetic architecture of cortical folding and brain volume in primates., Rogers, Jeffrey, Kochunov Peter, Zilles Karl, Shelledy Wendy, Lancaster Jack, Thompson Paul, Duggirala Ravindranath, Blangero John, Fox Peter T., and Glahn David C. , NeuroImage, 2010 Nov 15, Volume 53, Issue 3, p.1103-8, (2010) Abstract
A catalog of reference genomes from the human microbiome., Nelson, Karen E., Weinstock George M., Highlander Sarah K., Worley Kim C., Creasy Heather Huot, Wortman Jennifer Russo, Rusch Douglas B., Mitreva Makedonka, Sodergren Erica, Chinwalla Asif T., et al. , Science (New York, N.Y.), 2010 May 21, Volume 328, Issue 5981, p.994-9, (2010) Abstract
Large-scale genomic studies reveal central role of ABO in sP-selectin and sICAM-1 levels., Barbalic, Maja, Dupuis Josée, Dehghan Abbas, Bis Joshua C., Hoogeveen Ron C., Schnabel Renate B., Nambi Vijay, Bretler Monique, Smith Nicholas L., Peters Annette, et al. , Human molecular genetics, 2010 May 1, Volume 19, Issue 9, p.1863-72, (2010) Abstract
Calpain-10 is a component of the obesity-related quantitative trait locus Adip1., Cheverud, James M., Fawcett Gloria L., Jarvis Joseph P., Norgard Elizabeth A., Pavlicev Mihaela, Pletscher Susan L., Polonsky Kenneth S., Ye Honggang, Bell Graeme I., and Semenkovich Clay F. , Journal of lipid research, 2010 May, Volume 51, Issue 5, p.907-13, (2010) Abstract
MMP2 genetic variation is associated with measures of fibrous cap thickness: The Atherosclerosis Risk in Communities Carotid MRI Study., Volcik, Kelly A., Campbell Stephen, Chambless Lloyd E., Coresh Josef, Folsom Aaron R., Mosley Thomas H., Ni Hanyu, Wagenknecht Lynne E., Wasserman Bruce A., and Boerwinkle Eric , Atherosclerosis, 2010 May, Volume 210, Issue 1, p.188-93, (2010) Abstract
Personal genome research : what should the participant be told?, McGuire, Amy L., and Lupski James R. , Trends in genetics : TIG, 2010 May, Volume 26, Issue 5, p.199-201, (2010) Abstract
Taking DNA from the dead., McGuire, Amy L., Majumder Mary A., Halpern Scott D., Swindell J. S., Yaeger Laura V., Gibbs Richard A., and Wheeler Thomas M. , Nature reviews. Genetics, 2010 May, Volume 11, Issue 5, p.318, (2010)


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