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Publications

2009
Phylogeny of the macaques (Cercopithecidae: Macaca) based on Alu elements., Li, Jing, Han Kyudong, Xing Jinchuan, Kim Heui-Soo, Rogers Jeffrey, Ryder Oliver A., Disotell Todd, Yue Bisong, and Batzer Mark A. , Gene, 2009 Dec 15, Volume 448, Issue 2, p.242-9, (2009) Abstract
The completion of the Mammalian Gene Collection (MGC)., Temple, Gary, Gerhard Daniela S., Rasooly Rebekah, Feingold Elise A., Good Peter J., Robinson Cristen, Mandich Allison, Derge Jeffrey G., Lewis Jeanne, Shoaf Debonny, et al. , Genome research, 2009 Dec, Volume 19, Issue 12, p.2324-33, (2009) Abstract
Quantitative loci regulating plasma levels of gamma glutamyl transferase and albumin and their genetic correlations with cardiovascular risk factors., Bose, Tanushree, Voruganti Saroja V., Tejero Elizabeth M., Proffitt Michael J., Cox Laura A., VandeBerg John L., Mahaney Michael C., Rogers Jeffrey, Freeland-Graves Jeanne H., Cole Shelley A., et al. , Experimental biology and medicine (Maywood, N.J.), 2009 Dec, Volume 234, Issue 12, p.vi, 1519-24, (2009) Abstract
Use of wrapper algorithms coupled with a random forests classifier for variable selection in large-scale genomic association studies., Rodin, Andrei S., Litvinenko Anatoliy, Klos Kathy, Morrison Alanna C., Woodage Trevor, Coresh Josef, and Boerwinkle Eric , Journal of computational biology : a journal of computational molecular cell biology, 2009 Dec, Volume 16, Issue 12, p.1705-18, (2009) Abstract
The 8q24 cancer risk variant rs6983267 shows long-range interaction with MYC in colorectal cancer., Pomerantz, Mark M., Ahmadiyeh Nasim, Jia Li, Herman Paula, Verzi Michael P., Doddapaneni Harshavardhan, Beckwith Christine A., Chan Jennifer A., Hills Adam, Davis Matt, et al. , Nature genetics, 2009 Aug, Volume 41, Issue 8, p.882-4, (2009) Abstract
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics., Duan, Yongping, Zhou Lijuan, Hall David G., Li Wenbin, Doddapaneni Harshavardhan, Lin Hong, Liu Li, Vahling Cheryl M., Gabriel Dean W., Williams Kelly P., et al. , Molecular plant-microbe interactions : MPMI, 2009 Aug, Volume 22, Issue 8, p.1011-20, (2009) Abstract
High-throughput multiplex sequencing to discover copy number variants in Drosophila., Daines, Bryce, Wang Hui, Li Yumei, Han Yi, Gibbs Richard, and Chen Rui , Genetics, 2009 Aug, Volume 182, Issue 4, p.935-41, (2009) Abstract
Single nucleotide polymorphism in RECQL and survival in resectable pancreatic adenocarcinoma., Cotton, Ronald T., Li Donghui, Scherer Steven E., Muzny Donna M., Hodges Sally E., Catania Robbi L., Witkiewicz Agnieszka K., Brody Jonathan R., Kennedy Eugene P., Yeo Charles J., et al. , HPB : the official journal of the International Hepato Pancreato Biliary Association, 2009 Aug, Volume 11, Issue 5, p.435-44, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds., Gibbs, Richard A., Taylor Jeremy F., Van Tassell Curtis P., Barendse William, Eversole Kellye A., Gill Clare A., Green Ronnie D., Hamernik Debora L., Kappes Steven M., Lien Sigbjørn, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.528-32, (2009) Abstract
Fine mapping of chromosome 6q23-25 region in familial lung cancer families reveals RGS17 as a likely candidate gene., You, Ming, Wang Daolong, Liu Pengyuan, Vikis Haris, James Michael, Lu Yan, Wang Yian, Wang Min, Chen Qiong, Jia Dongmei, et al. , Clinical cancer research : an official journal of the American Association for Cancer Research, 2009 Apr 15, Volume 15, Issue 8, p.2666-74, (2009) Abstract
Apoptosis, autophagy, accelerated senescence and reactive oxygen in the response of human breast tumor cells to adriamycin., Di, Xu, Shiu Robert P., Newsham Irene F., and Gewirtz David A. , Biochemical pharmacology, 2009 Apr 1, Volume 77, Issue 7, p.1139-50, (2009) Abstract
Basic principles and technologies for deciphering the genetic map of cancer., Voidonikolas, Georgios, Kreml Stephanie S., Chen Changyi, Fisher William E., Brunicardi Charles F., Gibbs Richard A., and Gingras Marie-Claude , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.615-29, (2009) Abstract
Developing a tissue resource to characterize the genome of pancreatic cancer., Voidonikolas, Georgios, Gingras Marie-Claude, Hodges Sally, McGuire Amy L., Chen Changyi, Gibbs Richard A., Brunicardi Charles F., and Fisher William E. , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.723-31, (2009) Abstract
Genome-wide identification of allelic expression in hypertensive rats., Dmitrieva, Renata I., Hinojos Cruz A., Grove Megan L., Bell Rebecca J., Boerwinkle Eric, Fornage Myriam, and Doris Peter A. , Circulation. Cardiovascular genetics, 2009 Apr, Volume 2, Issue 2, p.106-15, (2009) Abstract
Microarray analysis of somatostatin receptor 5-regulated gene expression profiles in murine pancreas., Patel, Sanjeet G., Zhou Guisheng, Liu Shi-He, Li Min, Jeong Jae-Wook, DeMayo Francesco J., Gingras Marie-Claude, Gibbs Richard A., Fisher William E., and Brunicardi Charles F. , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.630-7, (2009) Abstract
Replication of long-bone length QTL in the F9-F10 LG,SM advanced intercross., Norgard, Elizabeth A., Jarvis Joseph P., Roseman Charles C., Maxwell Taylor J., Kenney-Hunt Jane P., Samocha Kaitlin E., Pletscher Susan L., Wang Bing, Fawcett Gloria L., Leatherwood Christopher J., et al. , Mammalian genome : official journal of the International Mammalian Genome Society, 2009 Apr, Volume 20, Issue 4, p.224-35, (2009) Abstract
Sequencing the full-length of the phosphatase and tensin homolog (PTEN) gene in hepatocellular carcinoma (HCC) using the 454 GS20 and Illumina GA DNA sequencing platforms., Rodriguez, Joel A., Guiteau Jacfranz J., Nazareth Lynne, Reid Jeff G., Goss John A., Gibbs Richard A., and Gingras Marie-Claude , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.647-52, (2009) Abstract
Bos taurus genome assembly., Liu, Yue, Qin Xiang, Song Xing-Zhi Henry, Jiang Huaiyang, Shen Yufeng, Durbin James K., Lien Sigbjørn, Kent Matthew Peter, Sodeland Marte, Ren Yanru, et al. , BMC genomics, 2009, Volume 10, p.180, (2009) Abstract
Horizontal gene transfer in cyanobacterial signature genes., Yerrapragada, Shailaja, Siefert Janet L., and Fox George E. , Methods in molecular biology (Clifton, N.J.), 2009, Volume 532, p.339-66, (2009) Abstract
Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach., Wang, Ying, Brahmakshatriya Vinayak, Zhu Huifeng, Lupiani Blanca, Reddy Sanjay M., Yoon Byung-Jun, Gunaratne Preethi H., Kim Jonghwan, Chen Rui, Wang Junjun, et al. , BMC genomics, 2009, Volume 10, p.512, (2009) Abstract
The INSIG2 rs7566605 genetic variant does not play a major role in obesity in a sample of 24,722 individuals from four cohorts., Bressler, Jan, Fornage Myriam, Hanis Craig L., Kao Wen Hong Linda, Lewis Cora E., McPherson Ruth, Dent Robert, Mosley Thomas H., Pennacchio Len A., and Boerwinkle Eric , BMC medical genetics, 2009, Volume 10, p.56, (2009) Abstract
Unlocking the bovine genome., Tellam, Ross L., Lemay Danielle G., Van Tassell Curtis P., Lewin Harris A., Worley Kim C., and Elsik Christine G. , BMC genomics, 2009, Volume 10, p.193, (2009) Abstract
MTA2 is a metastasis promoter in breast cancer cells., Covington, K. R., Barone I., Cui Y., Tsimelzon A., Rodriguez A., Wang T., and Fuqua SA , Cancer Research, Volume 69, Number 2, p.170S–170S, (2009)


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