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Publications

2007
Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium., Karpathy, Sandor E., Qin Xiang, Gioia Jason, Jiang Huaiyang, Liu Yamei, Petrosino Joseph F., Yerrapragada Shailaja, Fox George E., Haake Susan Kinder, Weinstock George M., et al. , PloS one, 2007, Volume 2, Issue 7, p.e659, (2007) Abstract
nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms., Yao, Jiqiang, Lin Hong, Doddapaneni Harshavardhan, and Civerolo Edwin L. , In silico biology, 2007, Volume 7, Issue 2, p.195-200, (2007) Abstract
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032., Gioia, Jason, Yerrapragada Shailaja, Qin Xiang, Jiang Huaiyang, Igboeli Okezie C., Muzny Donna, Dugan-Rocha Shannon, Ding Yan, Hawes Alicia, Liu Wen, et al. , PloS one, 2007, Volume 2, Issue 9, p.e928, (2007) Abstract
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032., Gioia, Jason, Yerrapragada Shailaja, Qin Xiang, Jiang Huaiyang, Igboeli Okezie C., Muzny Donna, Dugan-Rocha Shannon, Ding Yan, Hawes Alicia, Liu Wen, et al. , PloS one, 2007, Volume 2, Issue 9, p.e928, (2007) Abstract
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus., Highlander, Sarah K., Hultén Kristina G., Qin Xiang, Jiang Huaiyang, Yerrapragada Shailaja, Mason Edward O., Shang Yue, Williams Tiffany M., Fortunov Régine M., Liu Yamei, et al. , BMC microbiology, 2007, Volume 7, p.99, (2007) Abstract
Termination of DNA synthesis by N6-alkylated, not 3'-O-alkylated, photocleavable 2'-deoxyadenosine triphosphates., Wu, Weidong, Stupi Brian P., Litosh Vladislav A., Mansouri Dena, Farley Demetra, Morris Sidney, Metzker Sherry, and Metzker Michael L. , Nucleic acids research, 2007, Volume 35, Issue 19, p.6339-49, (2007) Abstract
Rats in the genomic era, Worley, K. C., Weinstock G. M., and Gibbs R. A. , Physiological Genomics, 11/2007, Volume 32, Issue 3, p.273 - 282, (2007)
Maintenance and replication during latency., Hu, J., Lieberman PM, and Renne R. , Maintenance and replication during latency., Cambridge, (2007) Abstract
2006
Meeting the growing demands of genetic research., McGuire, Amy L., and Gibbs Richard A. , The Journal of law, medicine & ethics : a journal of the American Society of Law, Medicine & Ethics, 2006 Winter, Volume 34, Issue 4, p.809-12, (2006)
Desmosomal dysfunction due to mutations in desmoplakin causes arrhythmogenic right ventricular dysplasia/cardiomyopathy., Yang, Zhao, Bowles Neil E., Scherer Steven E., Taylor Michael D., Kearney Debra L., Ge Shuping, Nadvoretskiy Vyacheslav V., DeFreitas Gilberto, Carabello Blasé, Brandon Lois I., et al. , Circulation research, 2006 Sep 15, Volume 99, Issue 6, p.646-55, (2006) Abstract
Mutant analysis of the Shal (Kv4) voltage-gated fast transient K+ channel in Caenorhabditis elegans., Fawcett, Gloria L., Santi Celia M., Butler Alice, Harris Thanawath, Covarrubias Manuel, and Salkoff Lawrence , The Journal of biological chemistry, 2006 Oct 13, Volume 281, Issue 41, p.30725-35, (2006) Abstract
Chromosome rearrangement and diversification of Francisella tularensis revealed by the type B (OSU18) genome sequence., Petrosino, Joseph F., Xiang Qin, Karpathy Sandor E., Jiang Huaiyang, Yerrapragada Shailaja, Liu Yamei, Gioia Jason, Hemphill Lisa, Gonzalez Arely, Raghavan T. M., et al. , Journal of bacteriology, 2006 Oct, Volume 188, Issue 19, p.6977-85, (2006) Abstract
The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny., Gioia, Jason, Qin Xiang, Jiang Huaiyang, Clinkenbeard Kenneth, Lo Reggie, Liu Yamei, Fox George E., Yerrapragada Shailaja, McLeod Michael P., McNeill Thomas Z., et al. , Journal of bacteriology, 2006 Oct, Volume 188, Issue 20, p.7257-66, (2006) Abstract
Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis., Qin, X., Evans J. D., Aronstein K. A., Murray K. D., and Weinstock G. M. , Insect molecular biology, 2006 Oct, Volume 15, Issue 5, p.715-8, (2006) Abstract
Sweetness and light: illuminating the honey bee genome., Robinson, G. E., Evans J. D., Maleszka R., Robertson H. M., Weaver D. B., Worley K., Gibbs R. A., and Weinstock G. M. , Insect molecular biology, 2006 Oct, Volume 15, Issue 5, p.535-9, (2006)
Recurrent duplication-driven transposition of DNA during hominoid evolution., Johnson, Matthew E., Cheng Ze, Morrison Anne V., Scherer Steven, Ventura Mario, Gibbs Richard A., Green Eric D., and Eichler Evan E. , Proceedings of the National Academy of Sciences of the United States of America, 2006 Nov 21, Volume 103, Issue 47, p.17626-31, (2006) Abstract
The genome of the sea urchin Strongylocentrotus purpuratus., Sodergren, Erica, Weinstock George M., Davidson Eric H., Cameron Andrew R., Gibbs Richard A., Angerer Robert C., Angerer Lynne M., Arnone Maria Ina, Burgess David R., Burke Robert D., et al. , Science (New York, N.Y.), 2006 Nov 10, Volume 314, Issue 5801, p.941-52, (2006) Abstract
Community annotation: procedures, protocols, and supporting tools., Elsik, Christine G., Worley Kim C., Zhang Lan, Milshina Natalia V., Jiang Huaiyang, Reese Justin T., Childs Kevin L., Venkatraman Anand, Dickens Michael C., Weinstock George M., et al. , Genome research, 2006 Nov, Volume 16, Issue 11, p.1329-33, (2006) Abstract
Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects., Savard, Joël, Tautz Diethard, Richards Stephen, Weinstock George M., Gibbs Richard A., Werren John H., Tettelin Hervé, and Lercher Martin J. , Genome research, 2006 Nov, Volume 16, Issue 11, p.1334-8, (2006) Abstract
Zebrafish dax1 is required for development of the interrenal organ, the adrenal cortex equivalent., Zhao, Y., Yang Z., Phelan J. K., Wheeler D. A., Lin S., and McCabe E. R. B. , Molecular endocrinology (Baltimore, Md.), 2006 Nov, Volume 20, Issue 11, p.2630-40, (2006) Abstract
High-throughput gene expression profiling--a work-in-progress with great potential for proteomics., Roussel, Eugene, and Gingras Marie-Claude , Current opinion in drug discovery & development, 2006 May, Volume 9, Issue 3, p.332-8, (2006) Abstract
P-selectin Thr715Pro polymorphism predicts P-selectin levels but not risk of incident coronary heart disease or ischemic stroke in a cohort of 14595 participants: the Atherosclerosis Risk in Communities Study., Volcik, Kelly A., Ballantyne Christie M., Coresh Josef, Folsom Aaron R., Wu Kenneth K., and Boerwinkle Eric , Atherosclerosis, 2006 May, Volume 186, Issue 1, p.74-9, (2006) Abstract
Recognition of pore-forming colicin Y by its cognate immunity protein., Smajs, David, Matejková Petra, and Weinstock George M. , FEMS microbiology letters, 2006 May, Volume 258, Issue 1, p.108-13, (2006) Abstract


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