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Publications

Journal Article
Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment., Bull-Otterson, Lara, Feng Wenke, Kirpich Irina, Wang Yuhua, Qin Xiang, Liu Yanlong, Gobejishvili Leila, Joshi-Barve Swati, Ayvaz Tulin, Petrosino Joseph, et al. , PloS one, 2013, Volume 8, Issue 1, p.e53028, (2013) Abstract
Metagenomic pyrosequencing and microbial identification., Petrosino, Joseph F., Highlander Sarah, Luna Ruth Ann, Gibbs Richard A., and Versalovic James , Clinical chemistry, 2009 May, Volume 55, Issue 5, p.856-66, (2009) Abstract
Metastasis tumor-associated protein 2 enhances metastatic behavior and is associated with poor outcomes in estrogen receptor-negative breast cancer., Covington, Kyle R., Brusco Lauren, Barone Ines, Tsimelzon Anna, Selever Jennifer, Corona-Rodriguez Arnoldo, Brown Powel, Kumar Rakesh, Hilsenbeck Susan G., and Fuqua Suzanne A. W. , Breast cancer research and treatment, 2013 Sep 28, (2013) Abstract
Method for 96-well M13 DNA template preparations for large-scale sequencing., Andersson, B., Lu J., Edwards K. E., Muzny D. M., and Gibbs R. A. , BioTechniques, 1996 Jun, Volume 20, Issue 6, p.1022-7, (1996) Abstract
Microarray analysis of somatostatin receptor 5-regulated gene expression profiles in murine pancreas., Patel, Sanjeet G., Zhou Guisheng, Liu Shi-He, Li Min, Jeong Jae-Wook, DeMayo Francesco J., Gingras Marie-Claude, Gibbs Richard A., Fisher William E., and Brunicardi Charles F. , World journal of surgery, 2009 Apr, Volume 33, Issue 4, p.630-7, (2009) Abstract
Microarray-based capture of novel expressed cell type-specific transfrags (CoNECT) to annotate tissue-specific transcription in Drosophila melanogaster., Hong, X., Doddapaneni H., Comeron J. M., Rodesch M. J., Halvensleben H. A., Nien C. Y., Bolei F., Metpally R., Richmond T. A., Albert T. J., et al. , G3 (Bethesda, Md.), 2012 Aug, Volume 2, Issue 8, p.873-82, (2012) Abstract
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology., English, Adam C., Richards Stephen, Han Yi, Wang Min, Vee Vanesa, Qu Jiaxin, Qin Xiang, Muzny Donna M., Reid Jeffrey G., Worley Kim C., et al. , PloS one, 2012, Volume 7, Issue 11, p.e47768, (2012) Abstract
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications., Yilmaz, Pelin, Kottmann Renzo, Field Dawn, Knight Rob, Cole James R., Amaral-Zettler Linda, Gilbert Jack A., Karsch-Mizrachi Ilene, Johnston Anjanette, Cochrane Guy, et al. , Nature biotechnology, 2011 May, Volume 29, Issue 5, p.415-20, (2011) Abstract
Mining genetic epidemiology data with Bayesian networks application to APOE gene variation and plasma lipid levels., Rodin, Andrei, Mosley Thomas H., Clark Andrew G., Sing Charles F., and Boerwinkle Eric , Journal of computational biology : a journal of computational molecular cell biology, 2005, Volume 12, Issue 1, p.1-11, (2005) Abstract
Mining genetic epidemiology data with Bayesian networks I: Bayesian networks and example application (plasma apoE levels)., Rodin, Andrei S., and Boerwinkle Eric , Bioinformatics (Oxford, England), 2005 Aug 1, Volume 21, Issue 15, p.3273-8, (2005) Abstract
Mis-assembled "segmental duplications" in two versions of the Bos taurus genome., Zimin, Aleksey V., Kelley David R., Roberts Michael, Marçais Guillaume, Salzberg Steven L., and Yorke James A. , PloS one, 2012, Volume 7, Issue 8, p.e42680, (2012) Abstract
A missense mutation in HK1 leads to autosomal dominant retinitis pigmentosa., Wang, Feng, Wang Yandong, Zhang Bin, Zhao Li, Lyubasyuk Vera, Wang Keqing, Xu Mingchu, Li Yumei, Wu Frances, Wen Cindy, et al. , Investigative ophthalmology & visual science, 2014 Oct 14, (2014) Abstract
MLH1-silenced and non-silenced subgroups of hypermutated colorectal carcinomas have distinct mutational landscapes., Donehower, Lawrence A., Creighton Chad J., Schultz Nikolaus, Shinbrot Eve, Chang Kyle, Gunaratne Preethi H., Muzny Donna, Sander Chris, Hamilton Stanley R., Gibbs Richard A., et al. , The Journal of pathology, 2013 Jan, Volume 229, Issue 1, p.99-110, (2013) Abstract
MMP2 genetic variation is associated with measures of fibrous cap thickness: The Atherosclerosis Risk in Communities Carotid MRI Study., Volcik, Kelly A., Campbell Stephen, Chambless Lloyd E., Coresh Josef, Folsom Aaron R., Mosley Thomas H., Ni Hanyu, Wagenknecht Lynne E., Wasserman Bruce A., and Boerwinkle Eric , Atherosclerosis, 2010 May, Volume 210, Issue 1, p.188-93, (2010) Abstract
Molecular and phenotypic variation in patients with severe Hunter syndrome., Timms, K. M., Bondeson M. L., Ansari-Lari M. A., Lagerstedt K., Muzny D. M., Dugan-Rocha S. P., Nelson D. L., Pettersson U., and Gibbs R. A. , Human molecular genetics, 1997 Mar, Volume 6, Issue 3, p.479-86, (1997) Abstract
The molecular basis of the sparse fur mouse mutation., Veres, G., Gibbs R. A., Scherer S. E., and Caskey C. T. , Science (New York, N.Y.), 1987 Jul 24, Volume 237, Issue 4813, p.415-7, (1987) Abstract
The molecular characterisation of HPRT CHERMSIDE and HPRT COORPAROO: two Lesch-Nyhan patients with reduced amounts of mRNA., Gordon, R. B., Dawson P. A., Sculley D. G., Emmerson B. T., Caskey C. T., and Gibbs R. A. , Gene, 1991 Dec 15, Volume 108, Issue 2, p.299-304, (1991) Abstract
Molecular characterization of 125I decay and X-ray-induced HPRT mutants in CHO cells., Gibbs, R. A., Camakaris J., Hodgson G. S., and Martin R. F. , International journal of radiation biology and related studies in physics, chemistry, and medicine, 1987 Feb, Volume 51, Issue 2, p.193-9, (1987) Abstract
Molecular characterization of a widespread, pathogenic, and antibiotic resistance-receptive Enterococcus faecalis lineage and dissemination of its putative pathogenicity island., Nallapareddy, Sreedhar R., Wenxiang Huang, Weinstock George M., and Murray Barbara E. , Journal of bacteriology, 2005 Aug, Volume 187, Issue 16, p.5709-18, (2005) Abstract
Molecular cloning of the wild-type and mutant thyA gene from Shigella flexneri Y., Nur-E-Kamal, M. S., Al Mamun A. A., and Ahmed Z. U. , Microbiology and immunology, 1994, Volume 38, Issue 4, p.309-12, (1994) Abstract
Molecular evidence of HIV-1 transmission in a criminal case., Metzker, Michael L., Mindell David P., Liu Xiao-Mei, Ptak Roger G., Gibbs Richard A., and Hillis David M. , Proceedings of the National Academy of Sciences of the United States of America, 2002 Oct 29, Volume 99, Issue 22, p.14292-7, (2002) Abstract
Molecular Findings Among Patients Referred for Clinical Whole-Exome Sequencing, Yang, Yaping, Muzny Donna M., Xia Fan, Niu Zhiyv, Person Richard, Ding Yan, Ward Patricia, Braxton Alicia, Wang Min, Buhay Christian, et al. , JAMA, 11/2014, Volume 312, Issue 18, p.1870, (2014)
Molecular Findings Among Patients Referred for Clinical Whole-Exome Sequencing., Yang, Yaping, Muzny Donna M., Xia Fan, Niu Zhiyv, Person Richard, Ding Yan, Ward Patricia, Braxton Alicia, Wang Min, Buhay Christian, et al. , JAMA, 2014 Oct 18, (2014) Abstract
Monoallelic and Biallelic Mutations in MAB21L2 Cause a Spectrum of Major Eye Malformations, Rainger, Joe, Pehlivan Davut, Johansson Stefan, Bengani Hemant, Sanchez-Pulido Luis, Williamson Kathleen A., Ture Mehmet, Barker Heather, Rosendahl Karen, Spranger Jürgen, et al. , The American Journal of Human Genetics, 06/2014, Volume 94, Issue 6, p.915 - 923, (2014)


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