Skip to Content

Publications

A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 
Software
BEAUTY-X: enhanced BLAST searches for DNA queries., Worley, K. C., Culpepper P., Wiese B. A., and Smith R. F. , Bioinformatics (Oxford, England), 1998, Volume 14, Issue 10, p.890-1, (1998) Abstract
Large-scale concatenation cDNA sequencing., Yu, W., Andersson B., Worley K. C., Muzny D. M., Ding Y., Liu W., Ricafrente J. Y., Wentland M. A., Lennon G., and Gibbs R. A. , Genome research, 1997 Apr, Volume 7, Issue 4, p.353-8, (1997) Abstract
Atlas2 Cloud: a framework for personal genome analysis in the cloud., Evani, Uday S., Challis Danny, Yu Jin, Jackson Andrew R., Paithankar Sameer, Bainbridge Matthew N., Jakkamsetti Adinarayana, Pham Peter, Coarfa Cristian, Milosavljevic Aleksandar, et al. , BMC genomics, 2012, Volume 13 Suppl 6, p.S19, (2012) Abstract
Fine mapping and identification of candidate pulmonary adenoma susceptibility 1 genes using advanced intercross lines., Wang, Min, Lemon William J., Liu Gongjie, Wang Yian, Iraqi Fuad A., Malkinson Alvin M., and You Ming , Cancer research, 2003 Jun 15, Volume 63, Issue 12, p.3317-24, (2003) Abstract
The Atlas genome assembly system., Havlak, Paul, Chen Rui, Durbin James K., Egan Amy, Ren Yanru, Song Xing-Zhi, Weinstock George M., and Gibbs Richard A. , Genome research, 2004 Apr, Volume 14, Issue 4, p.721-32, (2004) Abstract
Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination., Ansari-Lari, M. A., Shen Y., Muzny D. M., Lee W., and Gibbs R. A. , Genome research, 1997 Mar, Volume 7, Issue 3, p.268-80, (1997) Abstract
Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing., Wu, Jiaqian, Shteynberg David, Arumugam Manimozhiyan, Gibbs Richard A., and Brent Michael R. , Genome research, 2004 Apr, Volume 14, Issue 4, p.665-71, (2004) Abstract
PrimerSNP: a web tool for whole-genome selection of allele-specific and common primers of phylogenetically-related bacterial genomic sequences., Yao, Jiqiang, Lin Hong, Van Deynze Allen, Doddapaneni Harshavardhan, Francis Martha, Lemos Eliana Gertrudes Macedo, and Civerolo Edwin L. , BMC microbiology, 2008, Volume 8, p.185, (2008) Abstract
Identification of new members of a carbohydrate kinase-encoding gene family., Worley, K. C., King K. Y., Chua S., McCabe E. R., and Smith R. F. , Journal of computational biology : a journal of computational molecular cell biology, 1995 Fall, Volume 2, Issue 3, p.451-8, (1995) Abstract
Working on the assembly line., Gibbs, R. A., and Cockerill M. , Trends in biochemical sciences, 1995 Apr, Volume 20, Issue 4, p.162-3, (1995)
The Healthcare Administrator's Associate: an experiment in distributed healthcare information systems., Fowler, J., and Martin G. , Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium, 1997, p.548-52, (1997) Abstract
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications., Yilmaz, Pelin, Kottmann Renzo, Field Dawn, Knight Rob, Cole James R., Amaral-Zettler Linda, Gilbert Jack A., Karsch-Mizrachi Ilene, Johnston Anjanette, Cochrane Guy, et al. , Nature biotechnology, 2011 May, Volume 29, Issue 5, p.415-20, (2011) Abstract
Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps., Fjell, Christopher D., Bosdet Ian, Schein Jacqueline E., Jones Steven J. M., and Marra Marco A. , Genome research, 2003 Jun, Volume 13, Issue 6A, p.1244-9, (2003) Abstract
dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions., Liu, Xiaoming, Jian Xueqiu, and Boerwinkle Eric , Human mutation, 2011 Aug, Volume 32, Issue 8, p.894-9, (2011) Abstract
Identification of mutations leading to the Lesch-Nyhan syndrome by automated direct DNA sequencing of in vitro amplified cDNA., Gibbs, R. A., Nguyen P. N., McBride L. J., Koepf S. M., and Caskey C. T. , Proceedings of the National Academy of Sciences of the United States of America, 1989 Mar, Volume 86, Issue 6, p.1919-23, (1989) Abstract
European admixture on the Micronesian island of Kosrae: lessons from complete genetic information., Bonnen, Penelope E., Lowe Jennifer K., Altshuler David M., Breslow Jan L., Stoffel Markus, Friedman Jeffrey M., and Pe'er Itsik , European journal of human genetics : EJHG, 2010 Mar, Volume 18, Issue 3, p.309-16, (2010) Abstract
A SNP discovery method to assess variant allele probability from next-generation resequencing data., Shen, Yufeng, Wan Zhengzheng, Coarfa Cristian, Drabek Rafal, Chen Lei, Ostrowski Elizabeth A., Liu Yue, Weinstock George M., Wheeler David A., Gibbs Richard A., et al. , Genome research, 2010 Feb, Volume 20, Issue 2, p.273-80, (2010) Abstract
Pash: efficient genome-scale sequence anchoring by Positional Hashing., Kalafus, Ken J., Jackson Andrew R., and Milosavljevic Aleksandar , Genome research, 2004 Apr, Volume 14, Issue 4, p.672-8, (2004) Abstract
The MEDLINE Retriever., Fowler, J., Barber S., Gilson H., Long K. B., and Gorry G. A. , Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care, 1992, p.473-7, (1992) Abstract
Analysis of rare, exonic variation amongst subjects with autism spectrum disorders and population controls., Liu, Li, Sabo Aniko, Neale Benjamin M., Nagaswamy Uma, Stevens Christine, Lim Elaine, Bodea Corneliu A., Muzny Donna, Reid Jeffrey G., Banks Eric, et al. , PLoS genetics, 2013 Apr, Volume 9, Issue 4, p.e1003443, (2013) Abstract
ReadDepth: a parallel R package for detecting copy number alterations from short sequencing reads., Miller, Christopher A., Hampton Oliver, Coarfa Cristian, and Milosavljevic Aleksandar , PloS one, 2011, Volume 6, Issue 1, p.e16327, (2011) Abstract
nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms., Yao, Jiqiang, Lin Hong, Doddapaneni Harshavardhan, and Civerolo Edwin L. , In silico biology, 2007, Volume 7, Issue 2, p.195-200, (2007) Abstract
Hares and tortoises in the race to sequence the human genome: expectations and realities., Gibbs, R. A. , Trends in genetics : TIG, 1997 Oct, Volume 13, Issue 10, p.381-3, (1997)
Large-scale concatenation cDNA sequencing., Yu, W., Andersson B., Worley K. C., Muzny D. M., Ding Y., Liu W., Ricafrente J. Y., Wentland M. A., Lennon G., and Gibbs R. A. , Genome research, 1997 Apr, Volume 7, Issue 4, p.353-8, (1997) Abstract
Loader Lite: a new software tool for the ABI PRISM 3700 DNA sequencer., Scott, G. B. I., Steffen D. L., Edgar D., Warren J. T., Kovár C. L., Scherer S. E., Havlak P. H., and Gibbs R. A. , BioTechniques, 2002 Jun, Volume 32, Issue 6, p.1366, 1368, 1370-1, (2002) Abstract


about seo