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Software
Working on the assembly line., Gibbs, R. A., and Cockerill M. , Trends in biochemical sciences, 1995 Apr, Volume 20, Issue 4, p.162-3, (1995)
Large-scale concatenation cDNA sequencing., Yu, W., Andersson B., Worley K. C., Muzny D. M., Ding Y., Liu W., Ricafrente J. Y., Wentland M. A., Lennon G., and Gibbs R. A. , Genome research, 1997 Apr, Volume 7, Issue 4, p.353-8, (1997) Abstract
Atlas2 Cloud: a framework for personal genome analysis in the cloud., Evani, Uday S., Challis Danny, Yu Jin, Jackson Andrew R., Paithankar Sameer, Bainbridge Matthew N., Jakkamsetti Adinarayana, Pham Peter, Coarfa Cristian, Milosavljevic Aleksandar, et al. , BMC genomics, 2012, Volume 13 Suppl 6, p.S19, (2012) Abstract
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation., Persampieri, Jason, Ritter Deborah I., Lees Daniel, Lehoczky Jessica, Li Qiang, Guo Su, and Chuang Jeffrey H. , Bioinformatics (Oxford, England), 2008 Oct 15, Volume 24, Issue 20, p.2418-9, (2008) Abstract
The Healthcare Administrator's Associate: an experiment in distributed healthcare information systems., Fowler, J., and Martin G. , Proceedings : a conference of the American Medical Informatics Association / ... AMIA Annual Fall Symposium. AMIA Fall Symposium, 1997, p.548-52, (1997) Abstract
PhenoDB: a new web-based tool for the collection, storage, and analysis of phenotypic features., Hamosh, Ada, Sobreira Nara, Hoover-Fong Julie, Sutton Reid V., Boehm Corinne, Schiettecatte François, and Valle David , Human mutation, 2013 Apr, Volume 34, Issue 4, p.566-71, (2013) Abstract
Identification of new members of a carbohydrate kinase-encoding gene family., Worley, K. C., King K. Y., Chua S., McCabe E. R., and Smith R. F. , Journal of computational biology : a journal of computational molecular cell biology, 1995 Fall, Volume 2, Issue 3, p.451-8, (1995) Abstract
Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing., Wu, Jiaqian, Shteynberg David, Arumugam Manimozhiyan, Gibbs Richard A., and Brent Michael R. , Genome research, 2004 Apr, Volume 14, Issue 4, p.665-71, (2004) Abstract
Identification of mutations leading to the Lesch-Nyhan syndrome by automated direct DNA sequencing of in vitro amplified cDNA., Gibbs, R. A., Nguyen P. N., McBride L. J., Koepf S. M., and Caskey C. T. , Proceedings of the National Academy of Sciences of the United States of America, 1989 Mar, Volume 86, Issue 6, p.1919-23, (1989) Abstract
Pash: efficient genome-scale sequence anchoring by Positional Hashing., Kalafus, Ken J., Jackson Andrew R., and Milosavljevic Aleksandar , Genome research, 2004 Apr, Volume 14, Issue 4, p.672-8, (2004) Abstract
Loader Lite: a new software tool for the ABI PRISM 3700 DNA sequencer., Scott, G. B. I., Steffen D. L., Edgar D., Warren J. T., Kovár C. L., Scherer S. E., Havlak P. H., and Gibbs R. A. , BioTechniques, 2002 Jun, Volume 32, Issue 6, p.1366, 1368, 1370-1, (2002) Abstract
nWayComp: a genome-wide sequence comparison tool for multiple strains/species of phylogenetically related microorganisms., Yao, Jiqiang, Lin Hong, Doddapaneni Harshavardhan, and Civerolo Edwin L. , In silico biology, 2007, Volume 7, Issue 2, p.195-200, (2007) Abstract
The MEDLINE Retriever., Fowler, J., Barber S., Gilson H., Long K. B., and Gorry G. A. , Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care, 1992, p.473-7, (1992) Abstract
dbNSFP: a lightweight database of human nonsynonymous SNPs and their functional predictions., Liu, Xiaoming, Jian Xueqiu, and Boerwinkle Eric , Human mutation, 2011 Aug, Volume 32, Issue 8, p.894-9, (2011) Abstract
A clone-array pooled shotgun strategy for sequencing large genomes., Cai, W. W., Chen R., Gibbs R. A., and Bradley A. , Genome research, 2001 Oct, Volume 11, Issue 10, p.1619-23, (2001) Abstract
The complete genome of an individual by massively parallel DNA sequencing., Wheeler, David A., Srinivasan Maithreyan, Egholm Michael, Shen Yufeng, Chen Lei, McGuire Amy, He Wen, Chen Yi-Ju, Makhijani Vinod, Roth Thomas G., et al. , Nature, 2008 Apr 17, Volume 452, Issue 7189, p.872-6, (2008) Abstract
An integrative variant analysis suite for whole exome next-generation sequencing data., Challis, Danny, Yu Jin, Evani Uday S., Jackson Andrew R., Paithankar Sameer, Coarfa Cristian, Milosavljevic Aleksandar, Gibbs Richard A., and Yu Fuli , BMC bioinformatics, 2012, Volume 13, p.8, (2012) Abstract
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project., Chen, Rui, Sodergren Erica, Weinstock George M., and Gibbs Richard A. , Genome research, 2004 Apr, Volume 14, Issue 4, p.679-84, (2004) Abstract
Hares and tortoises in the race to sequence the human genome: expectations and realities., Gibbs, R. A. , Trends in genetics : TIG, 1997 Oct, Volume 13, Issue 10, p.381-3, (1997)
Internet Contig Explorer (iCE)--a tool for visualizing clone fingerprint maps., Fjell, Christopher D., Bosdet Ian, Schein Jacqueline E., Jones Steven J. M., and Marra Marco A. , Genome research, 2003 Jun, Volume 13, Issue 6A, p.1244-9, (2003) Abstract
Large-scale sequencing in human chromosome 12p13: experimental and computational gene structure determination., Ansari-Lari, M. A., Shen Y., Muzny D. M., Lee W., and Gibbs R. A. , Genome research, 1997 Mar, Volume 7, Issue 3, p.268-80, (1997) Abstract
Collaborative Social and Medical Service System., Petermann, C. A., Bobroff R. B., Moore D. M., Gilson H. S., Li Y., Dargahi R., Classen D. W., Fowler J., Moreau D. R., and Beck J. R. , Proceedings / the ... Annual Symposium on Computer Application [sic] in Medical Care. Symposium on Computer Applications in Medical Care, 1994, p.614-8, (1994) Abstract
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping., English, Adam C., Salerno William J., and Reid Jeffrey G. , BMC bioinformatics, 2014, Volume 15, p.180, (2014) Abstract
European admixture on the Micronesian island of Kosrae: lessons from complete genetic information., Bonnen, Penelope E., Lowe Jennifer K., Altshuler David M., Breslow Jan L., Stoffel Markus, Friedman Jeffrey M., and Pe'er Itsik , European journal of human genetics : EJHG, 2010 Mar, Volume 18, Issue 3, p.309-16, (2010) Abstract
A SNP discovery method to assess variant allele probability from next-generation resequencing data., Shen, Yufeng, Wan Zhengzheng, Coarfa Cristian, Drabek Rafal, Chen Lei, Ostrowski Elizabeth A., Liu Yue, Weinstock George M., Wheeler David A., Gibbs Richard A., et al. , Genome research, 2010 Feb, Volume 20, Issue 2, p.273-80, (2010) Abstract


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