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Publications
Title
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Author
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Pina-Martins, Francisco
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Journal Article
Bradnam KR
,
Fass JN
,
Alexandrov A
,
Baranay P
,
Bechner M
,
Birol I
,
Boisvert S
,
Chapman JA
,
Chapuis G
,
Chikhi R
,
Chitsaz H
,
Chou W-C
,
Corbeil J
,
Del Fabbro C
,
T Docking R
,
Durbin R
,
Earl D
,
Emrich S
,
Fedotov P
,
Fonseca NA
,
Ganapathy G
,
Gibbs RA
,
Gnerre S
,
Godzaridis E
,
Goldstein S
,
Haimel M
,
Hall G
,
Haussler D
,
Hiatt JB
,
Ho IY
,
Howard J
,
Hunt M
,
Jackman SD
,
Jaffe DB
,
Jarvis ED
,
Jiang H
,
Kazakov S
,
Kersey PJ
,
Kitzman JO
,
Knight JR
,
Koren S
,
Lam T-W
,
Lavenier D
,
Laviolette F
,
Li Y
,
Li Z
,
Liu B
,
Liu Y
,
Luo R
,
Maccallum I
,
Macmanes MD
,
Maillet N
,
Melnikov S
,
Naquin D
,
Ning Z
,
Otto TD
,
Paten B
,
Paulo OS
,
Phillippy AM
,
Pina-Martins F
,
Place M
,
Przybylski D
,
Qin X
,
Qu C
,
Ribeiro FJ
,
Richards S
,
Rokhsar DS
,
J Ruby G
,
Scalabrin S
,
Schatz MC
,
Schwartz DC
,
Sergushichev A
,
Sharpe T
,
Shaw TI
,
Shendure J
,
Shi Y
,
Simpson JT
,
Song H
,
Tsarev F
,
Vezzi F
,
Vicedomini R
,
Vieira BM
,
Wang J
,
Worley KC
,
Yin S
,
Yiu S-M
,
Yuan J
,
Zhang G
,
Zhang H
,
Zhou S
,
Korf IF
.
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.
Gigascience. 2013 ;2(1):10.
PubMed
DOI
Google Scholar
Home
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Funding
News
Contact Us
Visiting HGSC
Careers
Projects
Clinical Lab
eMERGE
HeartCare
KidsCanSeq Study
RIGHT10K Study
TMC-CZI Project
Cancer Genomics
The Cancer Genome Atlas Project (TCGA)
Intracranial germ cell tumors
Pancreaticobiliary and duodenal tumors
Polycythemia vera
Human Genomics
Charcot-Marie-Tooth Project
CHARGE Consortium
eMERGE
Genomic Variation
Genomics and Space Medicine (Space Omics)
GREGoR
Human Genome Project
Ion Channel Project
SNP Discovery
Somatic Mosaicism Across Human Tissues (SMaHT)
Trans-Omics for Precision Medicine (TopMed)
Microbial Genomics
Microbial Projects
A. apis
A. castellani Neff
B. pumilus F036B
B. pumilus SAFR-032
D. crinitum OH494
D. discoideum AX4
E. coli DH10B
E. faecalis OG1
F. nucleatum ATCC10953
F. nucleatum ATCC23726
F. tularensis MI001730
F. tularensis OR96246
F. tularensis OSU18
F. tularensis RC503
Moraxella bovis Epp63
M. haemolytica PHL213
Paenibacillus larvae
P. stewartii
P. violaceum P6
R. typhi
S. aureus MRSA USA300
S. aureus MSSA
S. iniae
Texas Medical Center Genomic Center for Infectious Diseases (TMC GCID)
Microbiome Data Release Policy
Comparative
Non-human primates
Baboon
Black and white colobus
Chimpanzee
Drill
Gibbon
Marmoset
Mouse lemur
Orangutan
Owl monkey
Rhesus monkey
Sifaka lemur
Sooty mangabey
Other Mammals
Armadillo
Bovine
Hyrax
Kangaroo Rat
Megabat
Mouse
Peromyscus
Rat
Sheep
Wallaby
Y Chromosome
Marine Mammals
Dolphin
Killer whale
Reptiles
Adder
Arthropods
i5K Pilot
Asian long-horned beetle
Bark scorpion
Bed bug
Brown marmorated stink bug
Brown recluse spider
Bull-headed dung beetle
Caddisfly
Colorado potato beetle
Common house spider
Emerald ash borer
Eurytemora affinis
German cockroach
Glassy-Winged Sharpshooter
Hackberry petiole gall psyllid
Hrabe's jumping bristletail
Hyalella azteca
Mayfly
Mediterranean fruit fly
Milkweed bug
Parasitic wasp: T. pretiosum
Parasitic wasp: C. floridanum
Parasitic wood wasp: O. abietinus
Scarce Chaser
Sheep blowfly
Silvestri's Northern Forcepstail
Turnip sawfly
Velvet worm
Water strider
Western black widow spider
Western flower thrips
Aphid
Bees
Bumble Bee
Dwarf Honey Bee
Honey Bee
Drosophila
D. melanogaster
D. pseudoobscura
Library Construction
DGRP
DGRP Lines
modEncode
Black Fly
Butterfly
Centipede
Hessian Fly
Mite
Parasitic Wasp
Red flour beetle
Sand Fly
Tobacco Hornworm
Other Invertebrates
Acorn Worm
Cuttlefish
Sea Urchin
Publications
Software
Atlas2
ATLAS GapFill
Atlas-Link
Atlas Whole Genome Assembly Suite
Bang
bcm-ace-plots
Cassandra
CBT++
CoCa
DRAGEN
ERIS
ExCID Report
Honey
Jelly
MegaDot
Mercury
Parliament2
Princess
SimPed
Sniffles2
SNP Tools
SVCollector
SVhound
xAtlas
Resources
FTP Site
FTP Site Help
Conditions of use
HGSC Intranet
Glossary