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Publications

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A human dimorphism resulting from loss of an Alu., Edwards, M. C., and Gibbs R. A. , Genomics, 1992 Nov, Volume 14, Issue 3, p.590-7, (1992) Abstract
Automated DNA sequencing methods for detection and analysis of mutations: applications to the Lesch-Nyhan syndrome., Edwards, A., Gibbs R. A., Nguyen P. N., Ansorge W., and Caskey C. T. , Transactions of the Association of American Physicians, 1989, Volume 102, p.185-94, (1989)
Multiplex PCR: advantages, development, and applications., Edwards, M. C., and Gibbs R. A. , PCR methods and applications, 1994 Feb, Volume 3, Issue 4, p.S65-75, (1994)
Pentanucleotide repeat length polymorphism at the human CD4 locus., Edwards, M. C., Clemens P. R., Tristan M., Pizzuti A., and Gibbs R. A. , Nucleic acids research, 1991 Sep 11, Volume 19, Issue 17, p.4791, (1991)
D
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse., Durfee, Tim, Nelson Richard, Baldwin Schuyler, Plunkett Guy, Burland Valerie, Mau Bob, Petrosino Joseph F., Qin Xiang, Muzny Donna M., Ayele Mulu, et al. , Journal of bacteriology, 2008 Apr, Volume 190, Issue 7, p.2597-606, (2008) Abstract
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes., Dunning Hotopp, Julie C., Clark Michael E., Oliveira Deodoro C. S. G., Foster Jeremy M., Fischer Peter, Muñoz Torres Mónica C., Giebel Jonathan D., Kumar Nikhil, Ishmael Nadeeza, Wang Shiliang, et al. , Science (New York, N.Y.), 2007 Sep 21, Volume 317, Issue 5845, p.1753-6, (2007) Abstract
Complete genome sequence of citrus huanglongbing bacterium, 'Candidatus Liberibacter asiaticus' obtained through metagenomics., Duan, Yongping, Zhou Lijuan, Hall David G., Li Wenbin, Doddapaneni Harshavardhan, Lin Hong, Liu Li, Vahling Cheryl M., Gabriel Dean W., Williams Kelly P., et al. , Molecular plant-microbe interactions : MPMI, 2009 Aug, Volume 22, Issue 8, p.1011-20, (2009) Abstract
Mutations in the TGF-β repressor SKI cause Shprintzen-Goldberg syndrome with aortic aneurysm., Doyle, Alexander J., Doyle Jefferson J., Bessling Seneca L., Maragh Samantha, Lindsay Mark E., Schepers Dorien, Gillis Elisabeth, Mortier Geert, Homfray Tessa, Sauls Kimberly, et al. , Nature genetics, 2012 Nov, Volume 44, Issue 11, p.1249-54, (2012) Abstract
Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster., Doyle, Vinson P., Andersen John J., Nelson Bradley J., Metzker Michael L., and Brown Jeremy M. , Molecular phylogenetics and evolution, 2014 Feb 28, Volume 75C, p.126-137, (2014) Abstract
Comparison and integration of deleteriousness prediction methods for nonsynonymous SNVs in whole exome sequencing studies., Dong, Chengliang, Wei Peng, Jian Xueqiu, Gibbs Richard, Boerwinkle Eric, Wang Kai, and Liu Xiaoming , Human molecular genetics, 2015 Apr 15, Volume 24, Issue 8, p.2125-37, (2015) Abstract
MLH1-silenced and non-silenced subgroups of hypermutated colorectal carcinomas have distinct mutational landscapes., Donehower, Lawrence A., Creighton Chad J., Schultz Nikolaus, Shinbrot Eve, Chang Kyle, Gunaratne Preethi H., Muzny Donna, Sander Chris, Hamilton Stanley R., Gibbs Richard A., et al. , The Journal of pathology, 2013 Jan, Volume 229, Issue 1, p.99-110, (2013) Abstract
The use of primers from highly conserved pol regions to identify uncharacterized retroviruses by the polymerase chain reaction., Donehower, L. A., Bohannon R. C., Ford R. J., and Gibbs R. A. , Journal of virological methods, 1990 Apr, Volume 28, Issue 1, p.33-46, (1990) Abstract
Analysis of the genome-wide variations among multiple strains of the plant pathogenic bacterium Xylella fastidiosa., Doddapaneni, Harshavardhan, Yao Jiqiang, Lin Hong, Walker Andrew M., and Civerolo Edwin L. , BMC genomics, 2006, Volume 7, p.225, (2006) Abstract
Differential regulation and xenobiotic induction of tandem P450 monooxygenase genes pc-1 (CYP63A1) and pc-2 (CYP63A2) in the white-rot fungus Phanerochaete chrysosporium., Doddapaneni, Harshavardhan, and Yadav Jagjit S. , Applied microbiology and biotechnology, 2004 Oct, Volume 65, Issue 5, p.559-65, (2004) Abstract
A comparative genomic analysis of the oxidative enzymes potentially involved in lignin degradation by Agaricus bisporus., Doddapaneni, Harshavardhan, Subramanian Venkataramanan, Fu Bolei, and Cullen Dan , Fungal genetics and biology : FG & B, 2013 Jun, Volume 55, p.22-31, (2013) Abstract
VitisExpDB: a database resource for grape functional genomics., Doddapaneni, Harshavardhan, Lin Hong, Walker Andrew M., Yao Jiqiang, and Civerolo Edwin L. , BMC plant biology, 2008, Volume 8, p.23, (2008) Abstract
Comparative phylogenomics and multi-gene cluster analyses of the Citrus Huanglongbing (HLB)-associated bacterium Candidatus Liberibacter., Doddapaneni, Harshavardhan, Liao Huihong, Lin Hong, Bai Xianjin, Zhao Xiaolong, Civerolo Edwin L., Irey Michael, Coletta-Filho Helvecio, and Pietersen Gerhard , BMC research notes, 2008, Volume 1, p.72, (2008) Abstract
Exome sequencing identifies rare LDLR and APOA5 alleles conferring risk for myocardial infarction., Do, Ron, Stitziel Nathan O., Won Hong-Hee, Jørgensen Anders Berg, Duga Stefano, Angelica Merlini Pier, Kiezun Adam, Farrall Martin, Goel Anuj, Zuk Or, et al. , Nature, 2015 Feb 5, Volume 518, Issue 7537, p.102-6, (2015) Abstract
Hepatocyte nuclear factor 1 and hypertensive nephropathy., Dmitrieva, Renata I., Hinojos Cruz A., Boerwinkle Eric, Braun Michael C., Fornage Myriam, and Doris Peter A. , Hypertension, 2008 Jun, Volume 51, Issue 6, p.1583-9, (2008) Abstract
Genome-wide identification of allelic expression in hypertensive rats., Dmitrieva, Renata I., Hinojos Cruz A., Grove Megan L., Bell Rebecca J., Boerwinkle Eric, Fornage Myriam, and Doris Peter A. , Circulation. Cardiovascular genetics, 2009 Apr, Volume 2, Issue 2, p.106-15, (2009) Abstract
EAnnot: a genome annotation tool using experimental evidence., Ding, Li, Sabo Aniko, Berkowicz Nicolas, Meyer Rekha R., Shotland Yoram, Johnson Mark R., Pepin Kymberlie H., Wilson Richard K., and Spieth John , Genome research, 2004 Dec, Volume 14, Issue 12, p.2503-9, (2004) Abstract
Somatic mutations affect key pathways in lung adenocarcinoma., Ding, Li, Getz Gad, Wheeler David A., Mardis Elaine R., McLellan Michael D., Cibulskis Kristian, Sougnez Carrie, Greulich Heidi, Muzny Donna M., Morgan Margaret B., et al. , Nature, 2008 Oct 23, Volume 455, Issue 7216, p.1069-75, (2008) Abstract


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