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Publications

2004
EAnnot: a genome annotation tool using experimental evidence., Ding, Li, Sabo Aniko, Berkowicz Nicolas, Meyer Rekha R., Shotland Yoram, Johnson Mark R., Pepin Kymberlie H., Wilson Richard K., and Spieth John , Genome research, 2004 Dec, Volume 14, Issue 12, p.2503-9, (2004) Abstract
Variation in GRM3 affects cognition, prefrontal glutamate, and risk for schizophrenia., Egan, Michael F., Straub Richard E., Goldberg Terry E., Yakub Imtiaz, Callicott Joseph H., Hariri Ahmad R., Mattay Venkata S., Bertolino Alessandro, Hyde Thomas M., Shannon-Weickert Cynthia, et al. , Proceedings of the National Academy of Sciences of the United States of America, 2004 Aug 24, Volume 101, Issue 34, p.12604-9, (2004) Abstract
Imputing gene-treatment interactions when the genotype distribution is unknown using case-only and putative placebo analyses--a new method for the Genetics of Hypertension Associated Treatment (GenHAT) study., Davis, Barry R., Ford Charles E., Boerwinkle Eric, Arnett Donna, Eckfeldt John, and Black Henry , Statistics in medicine, 2004 Aug 15, Volume 23, Issue 15, p.2413-27, (2004) Abstract
Fosmid-based physical mapping of the Histoplasma capsulatum genome., Magrini, Vincent, Warren Wesley C., Wallis John, Goldman William E., Xu Jian, Mardis Elaine R., and McPherson John D. , Genome research, 2004 Aug, Volume 14, Issue 8, p.1603-9, (2004) Abstract
A bioinformatics analysis of memory consolidation reveals involvement of the transcription factor c-rel., Levenson, Jonathan M., Choi Sangdun, Lee Sun-Young, Cao Yun Anna, Ahn Hyung Jin, Worley Kim C., Pizzi Marina, Liou Hsiou-Chi, and Sweatt David J. , The Journal of neuroscience : the official journal of the Society for Neuroscience, 2004 Apr 21, Volume 24, Issue 16, p.3933-43, (2004) Abstract
Comparison of the genome of the oral pathogen Treponema denticola with other spirochete genomes., Seshadri, Rekha, Myers Garry S. A., Tettelin Hervé, Eisen Jonathan A., Heidelberg John F., Dodson Robert J., Davidsen Tanja M., DeBoy Robert T., Fouts Derrick E., Haft Dan H., et al. , Proceedings of the National Academy of Sciences of the United States of America, 2004 Apr 13, Volume 101, Issue 15, p.5646-51, (2004) Abstract
Genome sequence of the Brown Norway rat yields insights into mammalian evolution., Gibbs, Richard A., Weinstock George M., Metzker Michael L., Muzny Donna M., Sodergren Erica J., Scherer Steven, Scott Graham, Steffen David, Worley Kim C., Burch Paula E., et al. , Nature, 2004 Apr 1, Volume 428, Issue 6982, p.493-521, (2004) Abstract
The Atlas genome assembly system., Havlak, Paul, Chen Rui, Durbin James K., Egan Amy, Ren Yanru, Song Xing-Zhi, Weinstock George M., and Gibbs Richard A. , Genome research, 2004 Apr, Volume 14, Issue 4, p.721-32, (2004) Abstract
Diagnosis and treatment of levothyroxine pseudomalabsorption., Lips, D. J., van Reisen M. T., Voigt V., and Venekamp W. , The Netherlands journal of medicine, 2004 Apr, Volume 62, Issue 4, p.114-8, (2004) Abstract
Dynamic building of a BAC clone tiling path for the Rat Genome Sequencing Project., Chen, Rui, Sodergren Erica, Weinstock George M., and Gibbs Richard A. , Genome research, 2004 Apr, Volume 14, Issue 4, p.679-84, (2004) Abstract
Genomic analysis of the nuclear receptor family: new insights into structure, regulation, and evolution from the rat genome., Zhang, Zhengdong, Burch Paula E., Cooney Austin J., Lanz Rainer B., Pereira Fred A., Wu Jiaqian, Gibbs Richard A., Weinstock George, and Wheeler David A. , Genome research, 2004 Apr, Volume 14, Issue 4, p.580-90, (2004) Abstract
Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing., Wu, Jiaqian, Shteynberg David, Arumugam Manimozhiyan, Gibbs Richard A., and Brent Michael R. , Genome research, 2004 Apr, Volume 14, Issue 4, p.665-71, (2004) Abstract
Identification of rat genes by TWINSCAN gene prediction, RT-PCR, and direct sequencing., Wu, Jiaqian, Shteynberg David, Arumugam Manimozhiyan, Gibbs Richard A., and Brent Michael R. , Genome research, 2004 Apr, Volume 14, Issue 4, p.665-71, (2004) Abstract
Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome., Krzywinski, Martin, Wallis John, Gösele Claudia, Bosdet Ian, Chiu Readman, Graves Tina, Hummel Oliver, Layman Dan, Mathewson Carrie, Wye Natasja, et al. , Genome research, 2004 Apr, Volume 14, Issue 4, p.766-79, (2004) Abstract
Large-scale RT-PCR recovery of full-length cDNA clones., Wu, Jiaqian, Garcia Angela M., Hulyk Steven, Sneed Anna, Kowis Carla, Yuan Ye, Steffen David, McPherson John D., Gunaratne Preethi H., and Gibbs Richard A. , BioTechniques, 2004 Apr, Volume 36, Issue 4, p.690-6, 698-700, (2004) Abstract
Pash: efficient genome-scale sequence anchoring by Positional Hashing., Kalafus, Ken J., Jackson Andrew R., and Milosavljevic Aleksandar , Genome research, 2004 Apr, Volume 14, Issue 4, p.672-8, (2004) Abstract
Construction of small genome BAC library for functional and genomic applications., Smajs, David, Norris Steven J., and Weinstock George M. , Methods in molecular biology (Clifton, N.J.), 2004, Volume 255, p.47-56, (2004)
Genome-wide linkage disequilibrium and haplotype maps., Belmont, John W., and Gibbs Richard A. , American journal of pharmacogenomics : genomics-related research in drug development and clinical practice, 2004, Volume 4, Issue 4, p.253-62, (2004) Abstract
Pooled Genomic Indexing (PGI): analysis and design of experiments., Csurös, Miklós, and Milosavljevic Aleksandar , Journal of computational biology : a journal of computational molecular cell biology, 2004, Volume 11, Issue 5, p.1001-21, (2004) Abstract
Preparation of BAC libraries from bacterial genomes by in vitro packaging., Pal, Sangita, Mak Solida, and Weinstock George M. , Methods in molecular biology (Clifton, N.J.), 2004, Volume 255, p.57-68, (2004)
2003
Gene expression profiling and functional proteomic analysis reveal perturbed kinase-mediated signaling in genetic stroke susceptibility., Fornage, Myriam, Swank Michael W., Boerwinkle Eric, and Doris Peter A. , Physiological genomics, 2003 Sep 29, Volume 15, Issue 1, p.75-83, (2003) Abstract
An Enterococcus faecium secreted antigen, SagA, exhibits broad-spectrum binding to extracellular matrix proteins and appears essential for E. faecium growth., Teng, Fang, Kawalec Magdalena, Weinstock George M., Hryniewicz Waleria, and Murray Barbara E. , Infection and immunity, 2003 Sep, Volume 71, Issue 9, p.5033-41, (2003) Abstract
Novel potential ALL low-risk markers revealed by gene expression profiling with new high-throughput SSH-CCS-PCR., Qiu, J., Gunaratne P., Peterson L. E., Khurana D., Walsham N., Loulseged H., Karni R. J., Roussel E., Gibbs R. A., Margolin J. F., et al. , Leukemia, 2003 Sep, Volume 17, Issue 9, p.1891-900, (2003) Abstract
Using a pericentromeric interspersed repeat to recapitulate the phylogeny and expansion of human centromeric segmental duplications., Horvath, J. E., Gulden C. L., Bailey J. A., Yohn C., McPherson J. D., Prescott A., Roe B. A., de Jong P. J., Ventura M., Misceo D., et al. , Molecular biology and evolution, 2003 Sep, Volume 20, Issue 9, p.1463-79, (2003) Abstract
Concatenation cDNA sequencing for transcriptome analysis., Gunaratne, Preethi H., Wu Jiaqian, Garcia Angela M., Hulyk Steven, Worley Kim C., Margolin Judith F., and Gibbs Richard A. , Comptes rendus biologies, 2003 Oct-Nov, Volume 326, Issue 10-11, p.971-7, (2003) Abstract


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