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Publications

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D
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes., Dunning Hotopp, Julie C., Clark Michael E., Oliveira Deodoro C. S. G., Foster Jeremy M., Fischer Peter, Muñoz Torres Mónica C., Giebel Jonathan D., Kumar Nikhil, Ishmael Nadeeza, Wang Shiliang, et al. , Science (New York, N.Y.), 2007 Sep 21, Volume 317, Issue 5845, p.1753-6, (2007) Abstract
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse., Durfee, Tim, Nelson Richard, Baldwin Schuyler, Plunkett Guy, Burland Valerie, Mau Bob, Petrosino Joseph F., Qin Xiang, Muzny Donna M., Ayele Mulu, et al. , Journal of bacteriology, 2008 Apr, Volume 190, Issue 7, p.2597-606, (2008) Abstract
E
Pentanucleotide repeat length polymorphism at the human CD4 locus., Edwards, M. C., Clemens P. R., Tristan M., Pizzuti A., and Gibbs R. A. , Nucleic acids research, 1991 Sep 11, Volume 19, Issue 17, p.4791, (1991)
A human dimorphism resulting from loss of an Alu., Edwards, M. C., and Gibbs R. A. , Genomics, 1992 Nov, Volume 14, Issue 3, p.590-7, (1992) Abstract
Automated DNA sequencing methods for detection and analysis of mutations: applications to the Lesch-Nyhan syndrome., Edwards, A., Gibbs R. A., Nguyen P. N., Ansorge W., and Caskey C. T. , Transactions of the Association of American Physicians, 1989, Volume 102, p.185-94, (1989)
Multiplex PCR: advantages, development, and applications., Edwards, M. C., and Gibbs R. A. , PCR methods and applications, 1994 Feb, Volume 3, Issue 4, p.S65-75, (1994)
Variation in GRM3 affects cognition, prefrontal glutamate, and risk for schizophrenia., Egan, Michael F., Straub Richard E., Goldberg Terry E., Yakub Imtiaz, Callicott Joseph H., Hariri Ahmad R., Mattay Venkata S., Bertolino Alessandro, Hyde Thomas M., Shannon-Weickert Cynthia, et al. , Proceedings of the National Academy of Sciences of the United States of America, 2004 Aug 24, Volume 101, Issue 34, p.12604-9, (2004) Abstract
The genome of the social amoeba Dictyostelium discoideum., Eichinger, L., Pachebat J. A., Glöckner G., Rajandream M. - A., Sucgang R., Berriman M., Song J., Olsen R., Szafranski K., Xu Q., et al. , Nature, 2005 May 5, Volume 435, Issue 7038, p.43-57, (2005) Abstract
Fine structure of the human FMR1 gene., Eichler, E. E., Richards S., Gibbs R. A., and Nelson D. L. , Human molecular genetics, 1993 Aug, Volume 2, Issue 8, p.1147-53, (1993) Abstract
Fine structure of the human FMR1 gene., Eichler, E. E., Richards S., Gibbs R. A., and Nelson D. L. , Human molecular genetics, 1994 Apr, Volume 3, Issue 4, p.684-5, (1994)
Duplication of a gene-rich cluster between 16p11.1 and Xq28: a novel pericentromeric-directed mechanism for paralogous genome evolution., Eichler, E. E., Lu F., Shen Y., Antonacci R., Jurecic V., Doggett N. A., Moyzis R. K., Baldini A., Gibbs R. A., and Nelson D. L. , Human molecular genetics, 1996 Jul, Volume 5, Issue 7, p.899-912, (1996) Abstract
Potassium channels in C. elegans, Eisenmann, David M., and Fawcett G. , WormBook, 2005, (2005)
Community annotation: procedures, protocols, and supporting tools., Elsik, Christine G., Worley Kim C., Zhang Lan, Milshina Natalia V., Jiang Huaiyang, Reese Justin T., Childs Kevin L., Venkatraman Anand, Dickens Michael C., Weinstock George M., et al. , Genome research, 2006 Nov, Volume 16, Issue 11, p.1329-33, (2006) Abstract
B
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
E
Assessing structural variation in a personal genome-towards a human reference diploid genome., English, Adam C., Salerno William J., Hampton Oliver A., Gonzaga-Jauregui Claudia, Ambreth Shruthi, Ritter Deborah I., Beck Christine R., Davis Caleb F., Dahdouli Mahmoud, Ma Singer, et al. , BMC genomics, 2015 Apr 11, Volume 16, Issue 1, p.286, (2015) Abstract
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology., English, Adam C., Richards Stephen, Han Yi, Wang Min, Vee Vanesa, Qu Jiaxin, Qin Xiang, Muzny Donna M., Reid Jeffrey G., Worley Kim C., et al. , PloS one, 2012, Volume 7, Issue 11, p.e47768, (2012) Abstract
PBHoney: identifying genomic variants via long-read discordance and interrupted mapping., English, Adam C., Salerno William J., and Reid Jeffrey G. , BMC bioinformatics, 2014, Volume 15, p.180, (2014) Abstract
Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway., Enns, Gregory M., Shashi Vandana, Bainbridge Matthew, Gambello Michael J., Zahir Farah R., Bast Thomas, Crimian Rebecca, Schoch Kelly, Platt Julia, Cox Rachel, et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2014 Mar 20, (2014) Abstract
Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum-associated degradation pathway., Enns, Gregory M., Shashi Vandana, Bainbridge Matthew, Gambello Michael J., Zahir Farah R., Bast Thomas, Crimian Rebecca, Schoch Kelly, Platt Julia, Cox Rachel, et al. , Genetics in medicine : official journal of the American College of Medical Genetics, 2014 Oct, Volume 16, Issue 10, p.751-8, (2014) Abstract
Mutations in NGLY1 cause an inherited disorder of the endoplasmic reticulum–associated degradation pathway, Enns, Gregory M., Shashi Vandana, Bainbridge Matthew, Gambello Michael J., Zahir Farah R., Bast Thomas, Crimian Rebecca, Schoch Kelly, Platt Julia, Cox Rachel, et al. , Genetics in Medicine, 03/2014, (2014)
SINE retrotransposons cause epigenetic reprogramming of adjacent gene promoters., Estécio, Marcos R. H., Gallegos Juan, Dekmezian Mhair, Lu Yue, Liang Shoudan, and Issa Jean-Pierre J. , Molecular cancer research : MCR, 2012 Oct, Volume 10, Issue 10, p.1332-42, (2012) Abstract
Atlas2 Cloud: a framework for personal genome analysis in the cloud., Evani, Uday S., Challis Danny, Yu Jin, Jackson Andrew R., Paithankar Sameer, Bainbridge Matthew N., Jakkamsetti Adinarayana, Pham Peter, Coarfa Cristian, Milosavljevic Aleksandar, et al. , BMC genomics, 2012, Volume 13 Suppl 6, p.S19, (2012) Abstract
F
Genomic and proteomic analysis of transcription factor TFII-I reveals insight into the response to cellular stress., Fan, Alex Xiucheng, Papadopoulos Giorgio L., Hossain Mir A., Lin I-Ju, Hu Jianhong, Tang Tommy Ming, Kilberg Michael S., Renne Rolf, Strouboulis John, and Bungert Jörg , Nucleic acids research, 2014, Volume 42, Issue 12, p.7625-41, (2014) Abstract


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