Francisella tularensis OR96246

About the Project

Image of Francisella tularensis
Francisella tularensis colonization on Cysteine Heart Agar after 72 hours. Obtained from the CDC Public Health Image Library. Image credit: CDC/Larry Stauffer, Oregon State
P.I.: George Weinstock (BCM-HGSC), Joseph Petrosino (BCM-HGSC)
Collaborators: Jeannine Petersen (CDC, Ft. Collins), Karl Klose (University of Texas, San Antonio)
Funding:  
Grant#:  
Genome size:  
Strain: OR96246

Current Status of the Project

Latest assembly date: 6-27-2006
Total number of reads: 431,954
Coverage: 23.8x (for 1.9 Mb gneome)
Number of contigs: 111
N50 contig size: 26,683 bp
Number of scaffolds: NA
N50 scaffold size: NA

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You can download the data from our FTP site.

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Policy on Data Release

F. tularensis, a small, nonmotile, nonsporulating, gram-negative, coccobacillus is currently one of the most infectious bacteria known and is the causative agent of the systemic disease tularemia, a potentially severe and fatal disease in humans. F. tularensis is also characterized by its resilience to environmental conditions and its ease of dissemination. For these reasons, F. tularensis poses a serious threat to laboratory workers who handle the organism and is a bioterrorism concern.

The gamma-protobacterial family Francisellaceae consists of two genera: Francisella tularensis and Francisella philomiragia. F. tularensis has four subspecies: tularensis (Type A), holarctica (Type B), mediaasiatica (geographically restricted to the central Asia) and novicida (a rare isolate initially isolated from a water source in Utah in 1951). F. tularensis subsp. tularensis, is the most virulent subspecies and is geographically restricted to the North American continent, with only one report of isolation of Type A in Europe. Subspecies holarctica is moderately virulent and is found throughout the Northern hemisphere including the Scandinavian countries, Russia, Spain, Japan and the U. S. Because the subspecies are very similar, diagnostic microbiological identification has relied on differences in virulence and in a small number of non-routine biochemical/DNA assays (e.g. PCR-based DNA fingerprinting analyses).

The subsp. holarctica live attenuated vaccine strain (LVS) is currently the only effective vaccine against tularemia. The vaccine is approved in the U.S. only for use in clinical trials, and its future availability is undetermined because the protective response offered by the vaccine has not been well characterized, the basis of its attenuation is unknown, and the LVS strain is fully virulent when delivered intraperitoneally in mice. The fact that the LVS provides protective immunity suggests that efforts to create a defined attenuated mutant may be fruitful, however such strains may not be available for some time.

OR96246 is a virulent Type B strain isolated from a primate that died of tularemia at an Oregon primate housing facility in 1996. The sequence data from this genome will serve as a comparative reference to aid in the identification of potentially attenuating mutations in the LVS strain and will provide further data toward identifying the genetic determinants that distinguish Type B pathogenicity and geographic distribution.


Christopher, G.W., Cieslak, T.J., Pavlin, J.A., and E.M. Eitzen. 1997. Biological warfare: a historical perspective. JAMA 278:412-417

Tarnvik, A. 1989. Nature of protective immunity to Francisella tularensis. Rev. Infect. Dis. 11:440-451.

Gurycova, D. 1998. First isolation of Francisella tularensis subsp. tularensis in Europe. Eur. J. Epidemiol. 14:797-802.

Related Publications

Atkins LM, Holder ME, Ajami NJ, Metcalf GA, Weissenberger GM, Wang M, et al. High-Quality Draft Genome Sequence of Francisella tularensis subsp. holarctica Strain OR96-0246. Genome Announc. 2015 ;3(4).