Yi Han, Ph.D.

Assistant Professor, Department of Molecular and Human Genetics

image: Yi Han, Ph.D.Contact Information

yhan@bcm.edu

Publications

2024
Mahmoud M, Harting J, Corbitt H, Chen X, Jhangiani SN, Doddapaneni H, et al.. Closing the gap: Solving complex medically relevant genes at scale. medRxiv. 2024;.

Lim H, Gingras M-C, Zhao J, Byun J, Castro PD, Tsavachidis S, et al.. Somatic mutations of esophageal adenocarcinoma: a comparison between Black and White patients. Sci Rep. 2024;14(1):8988.

2022
Harris RA, Raveendran M, Lyfoung DT, Sedlazeck FJ, Mahmoud M, Prall TM, et al.. Construction of a new chromosome-scale, long-read reference genome assembly for the Syrian hamster, Mesocricetus auratus. Gigascience. 2022;11.

Menon V, Okhuysen PC, Chappell CL, Mahmoud M, Mahmoud M, Meng Q, et al.. Fully resolved assembly of Cryptosporidium parvum. Gigascience. 2022;11.

2019
Beck CR, Carvalho CMB, Akdemir ZC, Sedlazeck FJ, Song X, Meng Q, et al.. Megabase Length Hypermutation Accompanies Human Structural Variation at 17p11.2. Cell. 2019;176(6):1310-1324.e10.

2018
Lindsey ARI, Kelkar YD, Wu X, Sun D, Martinson EO, Yan Z, et al.. Comparative genomics of the miniature wasp and pest control agent Trichogramma pretiosum. BMC Biol. 2018;16(1):54.

Poynton HC, Hasenbein S, Benoit JB, Sepulveda MS, Poelchau MF, Hughes DST, et al.. The Toxicogenome of Hyalella azteca: A Model for Sediment Ecotoxicology and Evolutionary Toxicology. Environ Sci Technol. 2018;52(10):6009-6022.

Harrison MC, Jongepier E, Robertson HM, Arning N, Bitard-Feildel T, Chao H, et al.. Hemimetabolous genomes reveal molecular basis of termite eusociality. Nat Ecol Evol. 2018;2(3):557-566.

Palesch D, Bosinger SE, Tharp GK, Vanderford TH, Paiardini M, Chahroudi A, et al.. Sooty mangabey genome sequence provides insight into AIDS resistance in a natural SIV host. Nature. 2018;553(7686):77-81.

2017
Hampton OA, English AC, Wang M, Salerno WJ, Liu Y, Muzny DM, et al.. SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads. BMC Genomics. 2017;18(Suppl 6):691.

Schwager EE, Sharma PP, Clarke T, Leite DJ, Wierschin T, Pechmann M, et al.. The house spider genome reveals an ancient whole-genome duplication during arachnid evolution. BMC Biol. 2017;15(1):62.

Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, et al.. Erratum to: The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol. 2017;18(1):11.

Eyun S-I, Soh HYoung, Posavi M, Munro JB, Hughes DST, Murali SC, et al.. Evolutionary History of Chemosensory-Related Gene Families across the Arthropoda. Mol Biol Evol. 2017;34(8):1838-1862.

2016
Papanicolaou A, Schetelig MF, Arensburger P, Atkinson PW, Benoit JB, Bourtzis K, et al.. The whole genome sequence of the Mediterranean fruit fly, Ceratitis capitata (Wiedemann), reveals insights into the biology and adaptive evolution of a highly invasive pest species. Genome Biol. 2016;17(1):192.

Kanost MR, Arrese EL, Cao X, Chen Y-R, Chellapilla S, Goldsmith MR, et al.. Multifaceted biological insights from a draft genome sequence of the tobacco hornworm moth, Manduca sexta. Insect Biochem Mol Biol. 2016;76:118-147.

McKenna DD, Scully ED, Pauchet Y, Hoover K, Kirsch R, Geib SM, et al.. Genome of the Asian longhorned beetle (Anoplophora glabripennis), a globally significant invasive species, reveals key functional and evolutionary innovations at the beetle-plant interface. Genome Biol. 2016;17(1):227.

Gingras M-C, Covington KR, Chang DK, Donehower LA, Gill AJ, Ittmann MM, et al.. Ampullary Cancers Harbor ELF3 Tumor Suppressor Gene Mutations and Exhibit Frequent WNT Dysregulation. Cell Rep. 2016;14(4):907-919.

Benoit JB, Adelman ZN, Reinhardt K, Dolan A, Poelchau M, Jennings EC, et al.. Unique features of a global human ectoparasite identified through sequencing of the bed bug genome. Nat Commun. 2016;7:10165.

2015
Wang M, Beck CR, English AC, Meng Q, Buhay C, Han Y, et al.. PacBio-LITS: a large-insert targeted sequencing method for characterization of human disease-associated chromosomal structural variations. BMC Genomics. 2015;16(1):214.

Zhao C, Escalante LNavarro, Chen H, Benatti TR, Qu J, Chellapilla S, et al.. A massive expansion of effector genes underlies gall-formation in the wheat pest Mayetiola destructor. Curr Biol. 2015;25(5):613-20.