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Xiang Qin, Ph.D.

Assistant Professor, Department of Molecular and Human Genetics

image: Xiang Qin, Ph.D.Contact Information








Transcriptomic variation of pharmacogenes in multiple human tissues and lymphoblastoid cell lines., Chhibber, A., French C. E., Yee S. W., Gamazon E. R., Theusch E., Qin X., Webb A., Papp A. C., Wang A., Simmons C. Q., et al. , The pharmacogenomics journal, 2016 Feb 9, (2016) Abstract
PGRNseq: a targeted capture sequencing panel for pharmacogenetic research and implementation., Gordon, Adam S., Fulton Robert S., Qin Xiang, Mardis Elaine R., Nickerson Deborah A., and Scherer Steve , Pharmacogenetics and genomics, 2016 Jan 5, (2016) Abstract
Generation and characterization of antibodies against Asian elephant (Elephas maximus) IgG, IgM, and IgA., Humphreys, Alan F., Tan Jie, Peng Rongsheng, Benton Susan M., Qin Xiang, Worley Kim C., Mikulski Rose L., Chow Dar-Chone, Palzkill Timothy G., and Ling Paul D. , PloS one, 2015, Volume 10, Issue 2, p.e0116318, (2015) Abstract
Convergent evolution of the genomes of marine mammals., Foote, Andrew D., Liu Yue, Thomas Gregg W. C., Vinař Tomáš, Alföldi Jessica, Deng Jixin, Dugan Shannon, van Elk Cornelis E., Hunter Margaret E., Joshi Vandita, et al. , Nature genetics, 2015 Mar, Volume 47, Issue 3, p.272-5, (2015) Abstract
Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35, Boonma, Prapaporn, Spinler Jennifer K., Qin Xiang, Jittaprasatsin Chutima, Muzny Donna M., Doddapaneni Harsha, Gibbs Richard, Petrosino Joe, Tumwasorn Somying, and Versalovic James , Standards in Genomic Sciences, 02/2014, Volume 9, Issue 3, p.744 - 754, (2014)
Identification of genes and pathways involved in kidney renal clear cell carcinoma., Yang, William, Yoshigoe Kenji, Qin Xiang, Liu Jun S., Yang Jack Y., Niemierko Andrzej, Deng Youping, Liu Yunlong, Dunker A., Chen Zhongxue, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.S2, (2014) Abstract
Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms., Yang, Jack Y., Dunker A., Liu Jun S., Qin Xiang, Arabnia Hamid R., Yang William, Niemierko Andrzej, Chen Zhongxue, Luo Zuojie, Wang Liangjiang, et al. , BMC bioinformatics, 2014, Volume 15 Suppl 17, p.I1, (2014) Abstract
The emerging genomics and systems biology research lead to systems genomics studies., Yang, Mary Qu, Yoshigoe Kenji, Yang William, Tong Weida, Qin Xiang, Dunker A., Chen Zhongxue, Arbania Hamid R., Liu Jun S., Niemierko Andrzej, et al. , BMC genomics, 2014, Volume 15 Suppl 11, p.I1, (2014) Abstract
Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment., Bull-Otterson, Lara, Feng Wenke, Kirpich Irina, Wang Yuhua, Qin Xiang, Liu Yanlong, Gobejishvili Leila, Joshi-Barve Swati, Ayvaz Tulin, Petrosino Joseph, et al. , PloS one, 2013, Volume 8, Issue 1, p.e53028, (2013) Abstract
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species., Bradnam, Keith R., Fass Joseph N., Alexandrov Anton, Baranay Paul, Bechner Michael, Birol Inanç, Boisvert Sébastien, Chapman Jarrod A., Chapuis Guillaume, Chikhi Rayan, et al. , GigaScience, 2013 Jul 22, Volume 2, Issue 1, p.10, (2013) Abstract
Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A., Ling, Paul D., Reid Jeffrey G., Qin Xiang, Muzny Donna M., Gibbs Richard, Petrosino Joseph, Peng Rongsheng, Zong Jian-Chao, Heaggans Sarah Y., and Hayward Gary S. , Genome announcements, 2013 Mar-Apr, Volume 1, Issue 2, p.e0010613, (2013) Abstract
Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology., English, Adam C., Richards Stephen, Han Yi, Wang Min, Vee Vanesa, Qu Jiaxin, Qin Xiang, Muzny Donna M., Reid Jeffrey G., Worley Kim C., et al. , PloS one, 2012, Volume 7, Issue 11, p.e47768, (2012) Abstract
Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes., Qin, Xiang, Galloway-Peña Jessica R., Sillanpaa Jouko, Roh Jung Hyeob, Nallapareddy Sreedhar R., Chowdhury Shahreen, Bourgogne Agathe, Choudhury Tina, Muzny Donna M., Buhay Christian J., et al. , BMC microbiology, 2012, Volume 12, p.135, (2012) Abstract
Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains., Pětrošová, Helena, Zobaníková Marie, Čejková Darina, Mikalová Lenka, Pospíšilová Petra, Strouhal Michal, Chen Lei, Qin Xiang, Muzny Donna M., Weinstock George M., et al. , PLoS neglected tropical diseases, 2012, Volume 6, Issue 9, p.e1832, (2012) Abstract
Genomic and SNP analyses demonstrate a distant separation of the hospital and community-associated clades of Enterococcus faecium., Galloway-Peña, Jessica, Roh Jung Hyeob, Latorre Mauricio, Qin Xiang, and Murray Barbara E. , PloS one, 2012, Volume 7, Issue 1, p.e30187, (2012) Abstract
Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence., Cejková, Darina, Zobaníková Marie, Chen Lei, Pospíšilová Petra, Strouhal Michal, Qin Xiang, Mikalová Lenka, Norris Steven J., Muzny Donna M., Gibbs Richard A., et al. , PLoS neglected tropical diseases, 2012 Jan, Volume 6, Issue 1, p.e1471, (2012) Abstract
Complete genome sequence of Treponema pallidum strain DAL-1., Zobaníková, Marie, Mikolka Pavol, Cejková Darina, Pospíšilová Petra, Chen Lei, Strouhal Michal, Qin Xiang, Weinstock George M., and Smajs David , Standards in genomic sciences, 2012 Oct 10, Volume 7, Issue 1, p.12-21, (2012) Abstract
Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay., Šmajs, David, Zobaníková Marie, Strouhal Michal, Čejková Darina, Dugan-Rocha Shannon, Pospíšilová Petra, Norris Steven J., Albert Tom, Qin Xiang, Hallsworth-Pepin Kym, et al. , PloS one, 2011, Volume 6, Issue 5, p.e20415, (2011) Abstract
Diversity of the fsr-gelE region of the Enterococcus faecalis genome but conservation in strains with partial deletions of the fsr operon., Galloway-Peña, Jessica R., Bourgogne Agathe, Qin Xiang, and Murray Barbara E. , Applied and environmental microbiology, 2011 Jan, Volume 77, Issue 2, p.442-51, (2011) Abstract
Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome., Saulnier, Delphine M., Riehle Kevin, Mistretta Toni-Ann, Diaz Maria-Alejandra, Mandal Debasmita, Raza Sabeen, Weidler Erica M., Qin Xiang, Coarfa Cristian, Milosavljevic Aleksandar, et al. , Gastroenterology, 2011 Nov, Volume 141, Issue 5, p.1782-91, (2011) Abstract
The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment., Sczesnak, Andrew, Segata Nicola, Qin Xiang, Gevers Dirk, Petrosino Joseph F., Huttenhower Curtis, Littman Dan R., and Ivanov Ivaylo I. , Cell host & microbe, 2011 Sep 15, Volume 10, Issue 3, p.260-72, (2011) Abstract
Genetic basis for in vivo daptomycin resistance in enterococci., Arias, Cesar A., Panesso Diana, McGrath Danielle M., Qin Xiang, Mojica Maria F., Miller Corwin, Diaz Lorena, Tran Truc T., Rincon Sandra, Barbu Magda E., et al. , The New England journal of medicine, 2011 Sep 8, Volume 365, Issue 10, p.892-900, (2011) Abstract
Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential., Yeoman, Carl J., Yildirim Suleyman, Thomas Susan M., Durkin Scott A., Torralba Manolito, Sutton Granger, Buhay Christian J., Ding Yan, Dugan-Rocha Shannon P., Muzny Donna M., et al. , PloS one, 2010, Volume 5, Issue 8, p.e12411, (2010) Abstract
The fms21 (pilA)-fms20 locus encoding one of four distinct pili of Enterococcus faecium is harboured on a large transferable plasmid associated with gut colonization and virulence., Kim, David S., Singh Kavindra V., Nallapareddy Sreedhar R., Qin Xiang, Panesso Diana, Arias Cesar A., and Murray Barbara E. , Journal of medical microbiology, 2010 Apr, Volume 59, Issue Pt 4, p.505-7, (2010)
A catalog of reference genomes from the human microbiome., Nelson, Karen E., Weinstock George M., Highlander Sarah K., Worley Kim C., Creasy Heather Huot, Wortman Jennifer Russo, Rusch Douglas B., Mitreva Makedonka, Sodergren Erica, Chinwalla Asif T., et al. , Science (New York, N.Y.), 2010 May 21, Volume 328, Issue 5981, p.994-9, (2010) Abstract

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