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Xiang Qin, Ph.D.

Assistant Professor, Department of Molecular and Human Genetics

image: Xiang Qin, Ph.D.Contact Information

xqin@bcm.edu

 

 

 

 

 

 

Publications

Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds., Gibbs, Richard A., Taylor Jeremy F., Van Tassell Curtis P., Barendse William, Eversole Kellye A., Gill Clare A., Green Ronnie D., Hamernik Debora L., Kappes Steven M., Lien Sigbjørn, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.528-32, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I)., Sillanpää, Jouko, Nallapareddy Sreedhar R., Qin Xiang, Singh Kavindra V., Muzny Donna M., Kovar Christie L., Nazareth Lynne V., Gibbs Richard A., Ferraro Mary J., Steckelberg James M., et al. , Journal of bacteriology, 2009 Nov, Volume 191, Issue 21, p.6643-53, (2009) Abstract
Genomics. Genome project standards in a new era of sequencing., Chain, P. S. G., Grafham D. V., Fulton R. S., Fitzgerald M. G., Hostetler J., Muzny D., Ali J., Birren B., Bruce D. C., Buhay C., et al. , Science (New York, N.Y.), 2009 Oct 9, Volume 326, Issue 5950, p.236-7, (2009)
Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF., Bourgogne, Agathe, Garsin Danielle A., Qin Xiang, Singh Kavindra V., Sillanpaa Jouko, Yerrapragada Shailaja, Ding Yan, Dugan-Rocha Shannon, Buhay Christian, Shen Hua, et al. , Genome biology, 2008, Volume 9, Issue 7, p.R110, (2008) Abstract
The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse., Durfee, Tim, Nelson Richard, Baldwin Schuyler, Plunkett Guy, Burland Valerie, Mau Bob, Petrosino Joseph F., Qin Xiang, Muzny Donna M., Ayele Mulu, et al. , Journal of bacteriology, 2008 Apr, Volume 190, Issue 7, p.2597-606, (2008) Abstract
The complete genome of an individual by massively parallel DNA sequencing., Wheeler, David A., Srinivasan Maithreyan, Egholm Michael, Shen Yufeng, Chen Lei, McGuire Amy, He Wen, Chen Yi-Ju, Makhijani Vinod, Roth Thomas G., et al. , Nature, 2008 Apr 17, Volume 452, Issue 7189, p.872-6, (2008) Abstract
Identification and phenotypic characterization of a second collagen adhesin, Scm, and genome-based identification and analysis of 13 other predicted MSCRAMMs, including four distinct pilus loci, in Enterococcus faecium., Sillanpää, Jouko, Nallapareddy Sreedhar R., Prakash Vittal P., Qin Xiang, Höök Magnus, Weinstock George M., and Murray Barbara E. , Microbiology (Reading, England), 2008 Oct, Volume 154, Issue Pt 10, p.3199-211, (2008) Abstract
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus., Highlander, Sarah K., Hultén Kristina G., Qin Xiang, Jiang Huaiyang, Yerrapragada Shailaja, Mason Edward O., Shang Yue, Williams Tiffany M., Fortunov Régine M., Liu Yamei, et al. , BMC microbiology, 2007, Volume 7, p.99, (2007) Abstract
Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium., Karpathy, Sandor E., Qin Xiang, Gioia Jason, Jiang Huaiyang, Liu Yamei, Petrosino Joseph F., Yerrapragada Shailaja, Fox George E., Haake Susan Kinder, Weinstock George M., et al. , PloS one, 2007, Volume 2, Issue 7, p.e659, (2007) Abstract
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032., Gioia, Jason, Yerrapragada Shailaja, Qin Xiang, Jiang Huaiyang, Igboeli Okezie C., Muzny Donna, Dugan-Rocha Shannon, Ding Yan, Hawes Alicia, Liu Wen, et al. , PloS one, 2007, Volume 2, Issue 9, p.e928, (2007) Abstract
Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032., Gioia, Jason, Yerrapragada Shailaja, Qin Xiang, Jiang Huaiyang, Igboeli Okezie C., Muzny Donna, Dugan-Rocha Shannon, Ding Yan, Hawes Alicia, Liu Wen, et al. , PloS one, 2007, Volume 2, Issue 9, p.e928, (2007) Abstract
Evolutionary and biomedical insights from the rhesus macaque genome., Gibbs, Richard A., Rogers Jeffrey, Katze Michael G., Bumgarner Roger, Weinstock George M., Mardis Elaine R., Remington Karin A., Strausberg Robert L., Venter Craig J., Wilson Richard K., et al. , Science (New York, N.Y.), 2007 Apr 13, Volume 316, Issue 5822, p.222-34, (2007) Abstract
High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis., Aronstein, K. A., Murray K. D., de León J. H., Qin X., and Weinstock G. M. , Mycologia, 2007 Jul-Aug, Volume 99, Issue 4, p.553-61, (2007) Abstract
Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis., Qin, X., Evans J. D., Aronstein K. A., Murray K. D., and Weinstock G. M. , Insect molecular biology, 2006 Oct, Volume 15, Issue 5, p.715-8, (2006) Abstract
The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny., Gioia, Jason, Qin Xiang, Jiang Huaiyang, Clinkenbeard Kenneth, Lo Reggie, Liu Yamei, Fox George E., Yerrapragada Shailaja, McLeod Michael P., McNeill Thomas Z., et al. , Journal of bacteriology, 2006 Oct, Volume 188, Issue 20, p.7257-66, (2006) Abstract
Genome sequence of the Brown Norway rat yields insights into mammalian evolution., Gibbs, Richard A., Weinstock George M., Metzker Michael L., Muzny Donna M., Sodergren Erica J., Scherer Steven, Scott Graham, Steffen David, Worley Kim C., Burch Paula E., et al. , Nature, 2004 Apr 1, Volume 428, Issue 6982, p.493-521, (2004) Abstract
Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae., McLeod, Michael P., Qin Xiang, Karpathy Sandor E., Gioia Jason, Highlander Sarah K., Fox George E., McNeill Thomas Z., Jiang Huaiyang, Muzny Donna, Jacob Leni S., et al. , Journal of bacteriology, 2004 Sep, Volume 186, Issue 17, p.5842-55, (2004) Abstract
Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae., McLeod, Michael P., Qin Xiang, Karpathy Sandor E., Gioia Jason, Highlander Sarah K., Fox George E., McNeill Thomas Z., Jiang Huaiyang, Muzny Donna, Jacob Leni S., et al. , Journal of bacteriology, 2004 Sep, Volume 186, Issue 17, p.5842-55, (2004) Abstract
The Enterococcus faecalis fsrB gene, a key component of the fsr quorum-sensing system, is associated with virulence in the rabbit endophthalmitis model., Mylonakis, Eleftherios, Engelbert Michael, Qin Xiang, Sifri Costi D., Murray Barbara E., Ausubel Frederick M., Gilmore Michael S., and Calderwood Stephen B. , Infection and immunity, 2002 Aug, Volume 70, Issue 8, p.4678-81, (2002) Abstract
Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice., Sifri, Costi D., Mylonakis Eleftherios, Singh Kavindra V., Qin Xiang, Garsin Danielle A., Murray Barbara E., Ausubel Frederick M., and Calderwood Stephen B. , Infection and immunity, 2002 Oct, Volume 70, Issue 10, p.5647-50, (2002) Abstract
Characterization of fsr, a regulator controlling expression of gelatinase and serine protease in Enterococcus faecalis OG1RF., Qin, X., Singh K. V., Weinstock G. M., and Murray B. E. , Journal of bacteriology, 2001 Jun, Volume 183, Issue 11, p.3372-82, (2001) Abstract
A simple model host for identifying Gram-positive virulence factors., Garsin, D. A., Sifri C. D., Mylonakis E., Qin X., Singh K. V., Murray B. E., Calderwood S. B., and Ausubel F. M. , Proceedings of the National Academy of Sciences of the United States of America, 2001 Sep 11, Volume 98, Issue 19, p.10892-7, (2001) Abstract
Analysis of a gene cluster of Enterococcus faecalis involved in polysaccharide biosynthesis., Xu, Y., Singh K. V., Qin X., Murray B. E., and Weinstock G. M. , Infection and immunity, 2000 Feb, Volume 68, Issue 2, p.815-23, (2000) Abstract
Effects of Enterococcus faecalis fsr genes on production of gelatinase and a serine protease and virulence., Qin, X., Singh K. V., Weinstock G. M., and Murray B. E. , Infection and immunity, 2000 May, Volume 68, Issue 5, p.2579-86, (2000) Abstract


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