Xiang Qin, Ph.D.

Assistant Professor, Department of Molecular and Human Genetics

image: Xiang Qin, Ph.D.Contact Information

xqin@bcm.edu

Publications

2014
Boonma P, Spinler JK, Qin X, Jittaprasatsin C, Muzny DM, Doddapaneni H, et al.. Draft genome sequences and description of Lactobacillus rhamnosus strains L31, L34, and L35. Stand Genomic Sci. 2014;9(3):744-54.

Yang JY, Dunker A, Liu JS, Qin X, Arabnia HR, Yang W, et al.. Advances in translational bioinformatics facilitate revealing the landscape of complex disease mechanisms. BMC Bioinformatics. 2014;15 Suppl 17:I1.

Yang MQu, Yoshigoe K, Yang W, Tong W, Qin X, Dunker A, et al.. The emerging genomics and systems biology research lead to systems genomics studies. BMC Genomics. 2014;15 Suppl 11:I1.

Yang W, Yoshigoe K, Qin X, Liu JS, Yang JY, Niemierko A, et al.. Identification of genes and pathways involved in kidney renal clear cell carcinoma. BMC Bioinformatics. 2014;15 Suppl 17:S2.

2013
Bradnam KR, Fass JN, Alexandrov A, Baranay P, Bechner M, Birol I, et al.. Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species. Gigascience. 2013;2(1):10.

Ling PD, Reid JG, Qin X, Muzny DM, Gibbs RA, Petrosino J, et al.. Complete Genome Sequence of Elephant Endotheliotropic Herpesvirus 1A. Genome Announc. 2013;1(2):e0010613.

Bull-Otterson L, Feng W, Kirpich I, Wang Y, Qin X, Liu Y, et al.. Metagenomic analyses of alcohol induced pathogenic alterations in the intestinal microbiome and the effect of Lactobacillus rhamnosus GG treatment. PLoS One. 2013;8(1):e53028.

2012
Zobaníková M, Mikolka P, Čejková D, Pospíšilová P, Chen L, Strouhal M, et al.. Complete genome sequence of Treponema pallidum strain DAL-1. Stand Genomic Sci. 2012;7(1):12-21.

Qin X, Galloway-Peña JR, Sillanpaa J, Roh JHyeob, Nallapareddy SR, Chowdhury S, et al.. Complete genome sequence of Enterococcus faecium strain TX16 and comparative genomic analysis of Enterococcus faecium genomes. BMC Microbiol. 2012;12:135.

Čejková D, Zobaníková M, Chen L, Pospíšilová P, Strouhal M, Qin X, et al.. Whole genome sequences of three Treponema pallidum ssp. pertenue strains: yaws and syphilis treponemes differ in less than 0.2% of the genome sequence. PLoS Negl Trop Dis. 2012;6(1):e1471.

Galloway-Peña J, Roh JHyeob, Latorre M, Qin X, Murray BE. Genomic and SNP analyses demonstrate a distant separation of the hospital and community-associated clades of Enterococcus faecium. PLoS One. 2012;7(1):e30187.

English AC, Richards S, Han Y, Wang M, Vee V, Qu J, et al.. Mind the gap: upgrading genomes with Pacific Biosciences RS long-read sequencing technology. PLoS One. 2012;7(11):e47768.

Pětrošová H, Zobaníková M, Čejková D, Mikalová L, Pospíšilová P, Strouhal M, et al.. Whole genome sequence of Treponema pallidum ssp. pallidum, strain Mexico A, suggests recombination between yaws and syphilis strains. PLoS Negl Trop Dis. 2012;6(9):e1832.

2011
Sczesnak A, Segata N, Qin X, Gevers D, Petrosino JF, Huttenhower C, et al.. The genome of th17 cell-inducing segmented filamentous bacteria reveals extensive auxotrophy and adaptations to the intestinal environment. Cell Host Microbe. 2011;10(3):260-72.

Arias CA, Panesso D, McGrath DM, Qin X, Mojica MF, Miller C, et al.. Genetic basis for in vivo daptomycin resistance in enterococci. N Engl J Med. 2011;365(10):892-900.

Saulnier DM, Riehle K, Mistretta T-A, Diaz M-A, Mandal D, Raza S, et al.. Gastrointestinal microbiome signatures of pediatric patients with irritable bowel syndrome. Gastroenterology. 2011;141(5):1782-91.

Galloway-Peña JR, Bourgogne A, Qin X, Murray BE. Diversity of the fsr-gelE region of the Enterococcus faecalis genome but conservation in strains with partial deletions of the fsr operon. Appl Environ Microbiol. 2011;77(2):442-51.

Smajs D, Zobaníková M, Strouhal M, Čejková D, Dugan-Rocha S, Pospíšilová P, et al.. Complete genome sequence of Treponema paraluiscuniculi, strain Cuniculi A: the loss of infectivity to humans is associated with genome decay. PLoS One. 2011;6(5):e20415.

2010
Nelson KE, Weinstock GM, Highlander SK, Worley KC, Creasy HHuot, Wortman JRusso, et al.. A catalog of reference genomes from the human microbiome. Science. 2010;328(5981):994-9.

Yeoman CJ, Yildirim S, Thomas SM, A Durkin S, Torralba M, Sutton G, et al.. Comparative genomics of Gardnerella vaginalis strains reveals substantial differences in metabolic and virulence potential. PLoS One. 2010;5(8):e12411.