Xiang Qin, Ph.D.

Assistant Professor, Department of Molecular and Human Genetics

image: Xiang Qin, Ph.D.Contact Information

xqin@bcm.edu

Publications

2010
Kim DS, Singh KV, Nallapareddy SR, Qin X, Panesso D, Arias CA, et al.. The fms21 (pilA)-fms20 locus encoding one of four distinct pili of Enterococcus faecium is harboured on a large transferable plasmid associated with gut colonization and virulence. J Med Microbiol. 2010;59(Pt 4):505-507.

2009
Chain PSG, Grafham DV, Fulton RS, Fitzgerald MG, Hostetler J, Muzny DM, et al.. Genomics. Genome project standards in a new era of sequencing. Science. 2009;326(5950):236-7.

Sillanpaa J, Nallapareddy SR, Qin X, Singh KV, Muzny DM, Kovar CL, et al.. A collagen-binding adhesin, Acb, and ten other putative MSCRAMM and pilus family proteins of Streptococcus gallolyticus subsp. gallolyticus (Streptococcus bovis Group, biotype I). J Bacteriol. 2009;191(21):6643-53.

Liu Y, Qin X, Song X-ZHenry, Jiang H, Shen Y, K Durbin J, et al.. Bos taurus genome assembly. BMC Genomics. 2009;10:180.

Gibbs RA, Taylor JF, Van Tassell CP, Barendse W, Eversole KA, Gill CA, et al.. Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds. Science. 2009;324(5926):528-32.

Elsik CG, Tellam RL, Worley KC, Gibbs RA, Muzny DM, Weinstock GM, et al.. The genome sequence of taurine cattle: a window to ruminant biology and evolution. Science. 2009;324(5926):522-8.

2008
Sillanpaa J, Nallapareddy SR, Prakash VP, Qin X, Höök M, Weinstock GM, et al.. Identification and phenotypic characterization of a second collagen adhesin, Scm, and genome-based identification and analysis of 13 other predicted MSCRAMMs, including four distinct pilus loci, in Enterococcus faecium. Microbiology (Reading). 2008;154(Pt 10):3199-3211.

Wheeler DA, Srinivasan M, Egholm M, Shen Y, Chen L, McGuire A, et al.. The complete genome of an individual by massively parallel DNA sequencing. Nature. 2008;452(7189):872-6.

Durfee T, Nelson R, Baldwin S, Plunkett G, Burland V, Mau B, et al.. The complete genome sequence of Escherichia coli DH10B: insights into the biology of a laboratory workhorse. J Bacteriol. 2008;190(7):2597-606.

Bourgogne A, Garsin DA, Qin X, Singh KV, Sillanpaa J, Yerrapragada S, et al.. Large scale variation in Enterococcus faecalis illustrated by the genome analysis of strain OG1RF. Genome Biol. 2008;9(7):R110.

2007
Gioia J, Yerrapragada S, Qin X, Jiang H, Igboeli OC, Muzny DM, et al.. Paradoxical DNA repair and peroxide resistance gene conservation in Bacillus pumilus SAFR-032. PLoS One. 2007;2(9):e928.

Highlander SK, Hultén KG, Qin X, Jiang H, Yerrapragada S, Mason EO, et al.. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol. 2007;7:99.

Aronstein KA, Murray KD, de León JH, Qin X, Weinstock GM. High mobility group (HMG-box) genes in the honeybee fungal pathogen Ascosphaera apis. Mycologia. 2007;99(4):553-61.

Karpathy SE, Qin X, Gioia J, Jiang H, Liu Y, Petrosino JF, et al.. Genome sequence of Fusobacterium nucleatum subspecies polymorphum - a genetically tractable fusobacterium. PLoS One. 2007;2(7):e659.

Gibbs RA, Rogers J, Katze MG, Bumgarner R, Weinstock GM, Mardis ER, et al.. Evolutionary and biomedical insights from the rhesus macaque genome. Science. 2007;316(5822):222-34.

2006
Qin X, Evans JD, Aronstein KA, Murray KD, Weinstock GM. Genome sequences of the honey bee pathogens Paenibacillus larvae and Ascosphaera apis. Insect Mol Biol. 2006;15(5):715-8.

Gioia J, Qin X, Jiang H, Clinkenbeard K, Lo R, Liu Y, et al.. The genome sequence of Mannheimia haemolytica A1: insights into virulence, natural competence, and Pasteurellaceae phylogeny. J Bacteriol. 2006;188(20):7257-66.

2004
McLeod MP, Qin X, Karpathy SE, Gioia J, Highlander SK, Fox GE, et al.. Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae. J Bacteriol. 2004;186(17):5842-55.

Gibbs RA, Weinstock GM, Metzker ML, Muzny DM, Sodergren EJ, Scherer SE, et al.. Genome sequence of the Brown Norway rat yields insights into mammalian evolution. Nature. 2004;428(6982):493-521.

2002
Sifri CD, Mylonakis E, Singh KV, Qin X, Garsin DA, Murray BE, et al.. Virulence effect of Enterococcus faecalis protease genes and the quorum-sensing locus fsr in Caenorhabditis elegans and mice. Infect Immun. 2002;70(10):5647-50.