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David Wheeler, Ph.D.

Professor, Department of Molecular and Human Genetics

image: David Wheeler, Ph.D.Contact Information

wheeler@bcm.edu

 

 

 

 

 

 

Publications

Integrating common and rare genetic variation in diverse human populations., Altshuler, David M., Gibbs Richard A., Peltonen Leena, Altshuler David M., Gibbs Richard A., Peltonen Leena, Dermitzakis Emmanouil, Schaffner Stephen F., Yu Fuli, Peltonen Leena, et al. , Nature, 2010 Sep 2, Volume 467, Issue 7311, p.52-8, (2010) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
The genome sequence of taurine cattle: a window to ruminant biology and evolution., Elsik, Christine G., Tellam Ross L., Worley Kim C., Gibbs Richard A., Muzny Donna M., Weinstock George M., Adelson David L., Eichler Evan E., Elnitski Laura, Guigó Roderic, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.522-8, (2009) Abstract
Genome-wide survey of SNP variation uncovers the genetic structure of cattle breeds., Gibbs, Richard A., Taylor Jeremy F., Van Tassell Curtis P., Barendse William, Eversole Kellye A., Gill Clare A., Green Ronnie D., Hamernik Debora L., Kappes Steven M., Lien Sigbjørn, et al. , Science (New York, N.Y.), 2009 Apr 24, Volume 324, Issue 5926, p.528-32, (2009) Abstract
A common allele in RPGRIP1L is a modifier of retinal degeneration in ciliopathies., Khanna, Hemant, Davis Erica E., Murga-Zamalloa Carlos A., Estrada-Cuzcano Alejandro, Lopez Irma, den Hollander Anneke I., Zonneveld Marijke N., Othman Mohammad I., Waseem Naushin, Chakarova Christina F., et al. , Nature genetics, 2009 Jun, Volume 41, Issue 6, p.739-45, (2009) Abstract
Mutations in smooth muscle alpha-actin (ACTA2) cause coronary artery disease, stroke, and Moyamoya disease, along with thoracic aortic disease., Guo, Dong-Chuan, Papke Christina L., Tran-Fadulu Van, Regalado Ellen S., Avidan Nili, Johnson Ralph Jay, Kim Dong H., Pannu Hariyadarshi, Willing Marcia C., Sparks Elizabeth, et al. , American journal of human genetics, 2009 May, Volume 84, Issue 5, p.617-27, (2009) Abstract
Common and rare variants of DAOA in bipolar disorder., Maheshwari, Manjula, Shi Jiajun, Badner Judith A., Skol Andrew, Willour Virginia L., Muzny Donna M., Wheeler David A., Gerald Fowler R., Detera-Wadleigh Sevilla, McMahon Francis J., et al. , American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2009 Oct 5, Volume 150B, Issue 7, p.960-6, (2009) Abstract
Novel microRNA candidates and miRNA-mRNA pairs in embryonic stem (ES) cells., Gu, Peili, Reid Jeffrey G., Gao Xiaolian, Shaw Chad A., Creighton Chad, Tran Peter L., Zhou Xiaochuan, Drabek Rafal B., Steffen David L., Hoang David M., et al. , PloS one, 2008, Volume 3, Issue 7, p.e2548, (2008) Abstract
The complete genome of an individual by massively parallel DNA sequencing., Wheeler, David A., Srinivasan Maithreyan, Egholm Michael, Shen Yufeng, Chen Lei, McGuire Amy, He Wen, Chen Yi-Ju, Makhijani Vinod, Roth Thomas G., et al. , Nature, 2008 Apr 17, Volume 452, Issue 7189, p.872-6, (2008) Abstract
Somatic mutations affect key pathways in lung adenocarcinoma., Ding, Li, Getz Gad, Wheeler David A., Mardis Elaine R., McLellan Michael D., Cibulskis Kristian, Sougnez Carrie, Greulich Heidi, Muzny Donna M., Morgan Margaret B., et al. , Nature, 2008 Oct 23, Volume 455, Issue 7216, p.1069-75, (2008) Abstract
Evolutionary and biomedical insights from the rhesus macaque genome., Gibbs, Richard A., Rogers Jeffrey, Katze Michael G., Bumgarner Roger, Weinstock George M., Mardis Elaine R., Remington Karin A., Strausberg Robert L., Venter Craig J., Wilson Richard K., et al. , Science (New York, N.Y.), 2007 Apr 13, Volume 316, Issue 5822, p.222-34, (2007) Abstract
Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques., Hernandez, Ryan D., Hubisz Melissa J., Wheeler David A., Smith David G., Ferguson Betsy, Rogers Jeffrey, Nazareth Lynne, Indap Amit, Bourquin Traci, McPherson John, et al. , Science (New York, N.Y.), 2007 Apr 13, Volume 316, Issue 5822, p.240-3, (2007) Abstract
Characterizing the cancer genome in lung adenocarcinoma., Weir, Barbara A., Woo Michele S., Getz Gad, Perner Sven, Ding Li, Beroukhim Rameen, Lin William M., Province Michael A., Kraja Aldi, Johnson Laura A., et al. , Nature, 2007 Dec 6, Volume 450, Issue 7171, p.893-8, (2007) Abstract
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome., Margulies, Elliott H., Cooper Gregory M., Asimenos George, Thomas Daryl J., Dewey Colin N., Siepel Adam, Birney Ewan, Keefe Damian, Schwartz Ariel S., Hou Minmei, et al. , Genome research, 2007 Jun, Volume 17, Issue 6, p.760-74, (2007) Abstract
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project., Birney, Ewan, Stamatoyannopoulos John A., Dutta Anindya, Guigó Roderic, Gingeras Thomas R., Margulies Elliott H., Weng Zhiping, Snyder Michael, Dermitzakis Emmanouil T., Thurman Robert E., et al. , Nature, 2007 Jun 14, Volume 447, Issue 7146, p.799-816, (2007) Abstract
Direct selection of human genomic loci by microarray hybridization., Albert, Thomas J., Molla Michael N., Muzny Donna M., Nazareth Lynne, Wheeler David, Song Xingzhi, Richmond Todd A., Middle Chris M., Rodesch Matthew J., Packard Charles J., et al. , Nature methods, 2007 Nov, Volume 4, Issue 11, p.903-5, (2007) Abstract
A second generation human haplotype map of over 3.1 million SNPs., Frazer, Kelly A., Ballinger Dennis G., Cox David R., Hinds David A., Stuve Laura L., Gibbs Richard A., Belmont John W., Boudreau Andrew, Hardenbol Paul, Leal Suzanne M., et al. , Nature, 2007 Oct 18, Volume 449, Issue 7164, p.851-61, (2007) Abstract
Genome-wide detection and characterization of positive selection in human populations., Sabeti, Pardis C., Varilly Patrick, Fry Ben, Lohmueller Jason, Hostetter Elizabeth, Cotsapas Chris, Xie Xiaohui, Byrne Elizabeth H., McCarroll Steven A., Gaudet Rachelle, et al. , Nature, 2007 Oct 18, Volume 449, Issue 7164, p.913-8, (2007) Abstract
The DNA sequence, annotation and analysis of human chromosome 3., Muzny, Donna M., Scherer Steven E., Kaul Rajinder, Wang Jing, Yu Jun, Sudbrak Ralf, Buhay Christian J., Chen Rui, Cree Andrew, Ding Yan, et al. , Nature, 2006 Apr 27, Volume 440, Issue 7088, p.1194-8, (2006) Abstract
Targeting iCre expression to murine progesterone receptor cell-lineages using bacterial artificial chromosome transgenesis., Mukherjee, Atish, Soyal Selma M., Wheeler David A., Fernandez-Valdivia Rodrigo, Nguyen Jonathan, DeMayo Francesco J., and Lydon John P. , Genesis (New York, N.Y. : 2000), 2006 Dec, Volume 44, Issue 12, p.601-10, (2006) Abstract
The finished DNA sequence of human chromosome 12., Scherer, Steven E., Muzny Donna M., Buhay Christian J., Chen Rui, Cree Andrew, Ding Yan, Dugan-Rocha Shannon, Gill Rachel, Gunaratne Preethi, Harris Alan R., et al. , Nature, 2006 Mar 16, Volume 440, Issue 7082, p.346-51, (2006) Abstract
Zebrafish dax1 is required for development of the interrenal organ, the adrenal cortex equivalent., Zhao, Y., Yang Z., Phelan J. K., Wheeler D. A., Lin S., and McCabe E. R. B. , Molecular endocrinology (Baltimore, Md.), 2006 Nov, Volume 20, Issue 11, p.2630-40, (2006) Abstract
Comparative genome sequencing of Drosophila pseudoobscura: chromosomal, gene, and cis-element evolution., Richards, Stephen, Liu Yue, Bettencourt Brian R., Hradecky Pavel, Letovsky Stan, Nielsen Rasmus, Thornton Kevin, Hubisz Melissa J., Chen Rui, Meisel Richard P., et al. , Genome research, 2005 Jan, Volume 15, Issue 1, p.1-18, (2005) Abstract


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